PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019829-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | CO-like | ||||||||
Protein Properties | Length: 393aa MW: 43568.2 Da PI: 7.3557 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.1e-07 | 22 | 62 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ + +C++++ lC +C + H+ H++ SMil_00019829-RA_Salv 22 LCDFCGEQRSIVYCRSDSASLCLSCDRNVHSAnalskrHSR 62 5*****************************65677777765 PP | |||||||
2 | zf-B_box | 21.7 | 4.1e-07 | 64 | 104 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+++++++++ C + ++ lC++C +H++ H+ SMil_00019829-RA_Salv 64 LLCERCNSQPASVRCMEERVSLCHNCDWMGHSSsntstaHK 104 57*****************************7777777766 PP | |||||||
3 | CCT | 60 | 8.2e-21 | 336 | 378 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++RYkeK+ktRkFeKk+rY++RKa+A+ R RvKGrF k+ SMil_00019829-RA_Salv 336 RSDAVMRYKEKKKTRKFEKKVRYATRKARADVRRRVKGRFIKA 378 889*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.5E-11 | 18 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.698 | 18 | 65 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.67E-7 | 22 | 65 | No hit | No description |
PROSITE profile | PS50119 | 8.802 | 61 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.10E-4 | 65 | 95 | No hit | No description |
Pfam | PF06203 | 4.7E-16 | 336 | 378 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.209 | 336 | 378 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
LIIHLGQSVR IKKLICLSMG YLCDFCGEQR SIVYCRSDSA SLCLSCDRNV HSANALSKRH 60 SRTLLCERCN SQPASVRCME ERVSLCHNCD WMGHSSSNTS TAHKKQHVNC YSGCPSAAEL 120 SHIWSFLLDS PSVGGSACEQ GMDSMSISDN KLRDFQGTQE KNSCKGVSFA TEASNLSNVD 180 MDKEAVWMES STLLYSKMQN AGMMAGSTRS AMRKVYVPCE KGIAECEDND FYDNFNVDEI 240 DLGIENYDEL FGAALGNPDR LFDNEDIDGL FGPHDMSGSD CQGAYLAEGS PVGGMTCDQH 300 AAMQHLQIQL LWCIANVKHG RATMGPESAM PPSSSRSDAV MRYKEKKKTR KFEKKVRYAT 360 RKARADVRRR VKGRFIKAGD AYDYDPLGKS RSC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085424.1 | 1e-166 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020551824.1 | 1e-166 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020551825.1 | 1e-166 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-105 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A4D8ZNL2 | 0.0 | A0A4D8ZNL2_SALSN; Uncharacterized protein | ||||
STRING | EOX93573 | 1e-136 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 3e-86 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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