PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019829-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 393aa    MW: 43568.2 Da    PI: 7.3557
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019829-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.1e-072262539
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            C+ ++e++ + +C++++  lC +C  + H+       H++
  SMil_00019829-RA_Salv 22 LCDFCGEQRSIVYCRSDSASLCLSCDRNVHSAnalskrHSR 62
                           5*****************************65677777765 PP

2zf-B_box21.74.1e-0764104438
               zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                              C+++++++++  C + ++ lC++C   +H++      H+
  SMil_00019829-RA_Salv  64 LLCERCNSQPASVRCMEERVSLCHNCDWMGHSSsntstaHK 104
                            57*****************************7777777766 PP

3CCT608.2e-21336378143
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                            R  a++RYkeK+ktRkFeKk+rY++RKa+A+ R RvKGrF k+
  SMil_00019829-RA_Salv 336 RSDAVMRYKEKKKTRKFEKKVRYATRKARADVRRRVKGRFIKA 378
                            889*************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-111865IPR000315B-box-type zinc finger
PROSITE profilePS501199.6981865IPR000315B-box-type zinc finger
CDDcd000219.67E-72265No hitNo description
PROSITE profilePS501198.80261108IPR000315B-box-type zinc finger
CDDcd000212.10E-46595No hitNo description
PfamPF062034.7E-16336378IPR010402CCT domain
PROSITE profilePS5101715.209336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
LIIHLGQSVR IKKLICLSMG YLCDFCGEQR SIVYCRSDSA SLCLSCDRNV HSANALSKRH  60
SRTLLCERCN SQPASVRCME ERVSLCHNCD WMGHSSSNTS TAHKKQHVNC YSGCPSAAEL  120
SHIWSFLLDS PSVGGSACEQ GMDSMSISDN KLRDFQGTQE KNSCKGVSFA TEASNLSNVD  180
MDKEAVWMES STLLYSKMQN AGMMAGSTRS AMRKVYVPCE KGIAECEDND FYDNFNVDEI  240
DLGIENYDEL FGAALGNPDR LFDNEDIDGL FGPHDMSGSD CQGAYLAEGS PVGGMTCDQH  300
AAMQHLQIQL LWCIANVKHG RATMGPESAM PPSSSRSDAV MRYKEKKKTR KFEKKVRYAT  360
RKARADVRRR VKGRFIKAGD AYDYDPLGKS RSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085424.11e-166zinc finger protein CONSTANS-LIKE 9
RefseqXP_020551824.11e-166zinc finger protein CONSTANS-LIKE 9
RefseqXP_020551825.11e-166zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-105COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A4D8ZNL20.0A0A4D8ZNL2_SALSN; Uncharacterized protein
STRINGEOX935731e-136(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-86B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]