PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019803-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 228aa MW: 24993.7 Da PI: 6.0083

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019803-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	2.9e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ SMil_00019803-RA_Salv 8 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPITDRCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQV 95 7***********************89******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+a+la+lke+ SMil_00019803-RA_Salv 96 VNLQAQLASLKEQ 108 ******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.215	7	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-37	8	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNSGTGSPCG ACKFLRRKCV RGCVFAPYFC HEQGAAHFAA IHKVFGASNV SKLLAHLPIT 60 DRCEAAVTIA YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKEQAA HYIISSSNTA 120 ASPNDEKLYG GGGGRCDVQS WWQNQSTIPQ FDANFHSNVE NVAYFAGGAA MNIPNPSSVK 180 YENSGFVEEN NQSFGSFDSG EMQSDERQWP FQDDADDLQS VAFRYIHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-35	2	112	5	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-35	2	112	5	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080296.1	1e-118	LOB domain-containing protein 29
Swissprot	Q9M2J7	1e-66	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A2G9H1E5	1e-108	A0A2G9H1E5_9LAMI; Uncharacterized protein
STRING	VIT_07s0005g03020.t01	1e-97	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8446	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-58	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]