PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019731-RA_Salv
Common NameMYB39
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 262aa    MW: 30135.2 Da    PI: 8.2277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019731-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.6e-131462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l   + q  ++ +W+t +++ g+ R++k+c++rw +yl
  SMil_00019731-RA_Salv 14 KGPWTPEEDLKLSTFILQNNTHgSWSTLPSKAGLQRCGKSCRLRWINYL 62
                           79*****************9999************************97 PP
2Myb_DNA-binding50.54.8e-1668113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg ++ +E++ +++++++lG++ W+tIa+ ++ +Rt++++k++w+++l
  SMil_00019731-RA_Salv  68 RGDFSLQEEQSIIQLHALLGNR-WSTIASQLP-KRTDNEIKNYWNTHL 113
                            799*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.953962IPR017877Myb-like domain
SuperFamilySSF466892.44E-2510109IPR009057Homeodomain-like
SMARTSM007173.2E-81364IPR001005SANT/Myb domain
PfamPF002493.4E-111462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-201569IPR009057Homeodomain-like
CDDcd001674.61E-51662No hitNo description
PROSITE profilePS5129424.77263117IPR017930Myb domain
SMARTSM007174.5E-1567115IPR001005SANT/Myb domain
PfamPF002491.1E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2670117IPR009057Homeodomain-like
CDDcd001676.13E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRLPKHDKM GMKKGPWTPE EDLKLSTFIL QNNTHGSWST LPSKAGLQRC GKSCRLRWIN  60
YLRPDIKRGD FSLQEEQSII QLHALLGNRW STIASQLPKR TDNEIKNYWN THLKKKLTKM  120
GIDPVTHMPN HQQSKYFTNL CHVVQWESAR LQAEARLSNP NCATKAPPPP PRCLDVLKVW  180
VEANPGVEIS NAMFNGFLAS NDQPQNSTGN HRDDWVKGTM KNSHKIEEHT YPDTNYFIEE  240
GDDLFSCWNV LEDGHLNCWD CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593930.0KF059393.1 Salvia miltiorrhiza MYB-related transcription factor (MYB39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074609.12e-84transcription factor MYB16
RefseqXP_027151487.13e-84transcription factor MYB16
SwissprotQ9LE631e-76MY106_ARATH; Transcription factor MYB106
SwissprotQ9LXF11e-76MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A059PRE50.0A0A059PRE5_SALMI; MYB-related transcription factor
STRINGXP_009792075.17e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.23e-79myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  4. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]