PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019658-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 369aa MW: 40825.5 Da PI: 9.8944

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019658-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.8	2.8e-26	31	116	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +gkw+++++++eHnHel SMil_00019658-RA_Salv 31 YYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRLSGKWYIHSFVKEHNHEL 114 8*************************************999877....9**********************************9 PP FAR1 90 ap 91 p SMil_00019658-RA_Salv 115 LP 116 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-24	31	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEASSSSVLV NSNLEPRDDL EFDTHEAAYA YYKEYAKSVG FGTAKLSSRR SRASKEFIDA 60 KFSCIRYGNK QQSDDAINPR PSPKIGCKAS MHVKRRLSGK WYIHSFVKEH NHELLPAQAH 120 FFRSHRIADS VNNDTKVRKK KVPASVLKQY GAYQHCIVVL QMSGVFSIPF KYILQRWTNA 180 ATSRIPLSEK LEEVQAKVRR YNDLCRRAII LGEEGSLSEE SYNNAVAAIN EALKHCTIVN 240 QPSNQNGLRP HVSAPLAILG VGGADHNVAM TSGQQVPTAK VIDTNKGSKR INSGKEAASN 300 GGITGKKGKV PLEPPITNIG THGIFQHMDM PGPLDYPALY PRFLTTLLKG GEMSKRGVEM 360 LGEMLEEQS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEASSSSVLV NSNLEPRDDL EFDTHEAAYA YYKEYAKSVG FGTAKLSSRR SRASKEFIDA  60
KFSCIRYGNK QQSDDAINPR PSPKIGCKAS MHVKRRLSGK WYIHSFVKEH NHELLPAQAH  120
FFRSHRIADS VNNDTKVRKK KVPASVLKQY GAYQHCIVVL QMSGVFSIPF KYILQRWTNA  180
ATSRIPLSEK LEEVQAKVRR YNDLCRRAII LGEEGSLSEE SYNNAVAAIN EALKHCTIVN  240
QPSNQNGLRP HVSAPLAILG VGGADHNVAM TSGQQVPTAK VIDTNKGSKR INSGKEAASN  300
GGITGKKGKV PLEPPITNIG THGIFQHMDM PGPLDYPALY PRFLTTLLKG GEMSKRGVEM  360
LGEMLEEQS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072522.1	1e-106	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_011072523.1	1e-106	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	2e-62	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2G9GHM0	1e-107	A0A2G9GHM0_9LAMI; Uncharacterized protein
STRING	Migut.I01028.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	6e-52	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]