PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019554-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 419aa    MW: 45206.5 Da    PI: 8.0642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019554-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.53.7e-20229270242
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                             Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v ++ 
  SMil_00019554-RA_Salv 229 TDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVRTEM 270
                            7*************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-19213269IPR003657WRKY domain
SuperFamilySSF1182901.96E-17222271IPR003657WRKY domain
PROSITE profilePS5081119.325223266IPR003657WRKY domain
SMARTSM007742.0E-16228280IPR003657WRKY domain
PfamPF031064.2E-17230269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDSARSPPPP TIQFPLNLGR GGADQAAENA NDKGKAAVDE MDFFSEKKER SSGGGCGGAC  60
SDLYTTEPSS ISDFNVNTEL LLLTANNGGD GGTSSNSDCR LKSEVGVLKS KLERMNSENE  120
RLKEMLNHAK NKYNGLQMHL QTIIQEQQHK GVADQEGKIS FHGNGPPNAN DISSFEEDGP  180
TAGGEGNQSP QQKFLSHSAS PNSVDQATEA TIRKARVSVR AWCEGPMMTD GCQWRKYGQK  240
IAKGNPCPRA YYRCTMAVGC PVRKQVRTEM RRGQEHPCNN LRGPPQPPIA ANGDGYGVDN  300
LIRCENAPLG LNAECRWPNE LEFPSSNASP LLLQLGHNLH LRALSHRNIR PNDTPESIAI  360
ATASDALSRA TGHSLAAAAP RPGIVQPIPI FRPTNVSRNG SKQSSIAKFT LINESRATL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231240.0KM823124.1 Salvia miltiorrhiza WRKY protein (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079008.16e-77probable WRKY transcription factor 31 isoform X2
TrEMBLA0A0D5Y9850.0A0A0D5Y985_SALMI; WRKY protein
STRINGPGSC0003DMT4000388525e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2482022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-43WRKY family protein