PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019539-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 18366.5 Da PI: 5.0194 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ ++r++lg+f +e+Aa+a++ a+ +l+g SMil_00019539-RA_Salv 31 PVYRGVRKRR-WGKWVSEIREPKK---KTRIWLGSFPAPEMAARAYDVAAYCLKG 81 68*****887.**********854...6************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-12 | 31 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 32 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 32 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-12 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-31 | 33 | 91 | No hit | No description |
PRINTS | PR00367 | 2.2E-12 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MEQPPPCNND HPSTAAAAAA AETLGGGTRH PVYRGVRKRR WGKWVSEIRE PKKKTRIWLG 60 SFPAPEMAAR AYDVAAYCLK GGKAQLNFPD DIGLLPRPST SAARDIQAAA ALAANMAAEK 120 SDSAAAQGGG GDDFWAEIEL PELMNEPSPE VWCWSSNNCG DFYGDDDRIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 25 | 94 | 7 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835591.1 | 1e-77 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 2e-53 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A022RGF5 | 3e-76 | A0A022RGF5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01538.1.p | 5e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13874 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 4e-43 | ERF family protein |
Publications ? help Back to Top | |||
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