PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019440-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 40396.5 Da PI: 5.2796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 80 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++v +G ++W++Iar ++ gR++k+c++rw + SMil_00019440-RA_Salv 80 KGPWSPDEDAMLSQLVGNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 125 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 132 | 176 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a+ +G++ W++Iar ++ gRt++ +k++w++ SMil_00019440-RA_Salv 132 RKPFTDEEDRIILQAHSIHGNK-WASIARLLP-GRTDNAIKNHWNST 176 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.328 | 75 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-30 | 77 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 79 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 80 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 81 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.35E-13 | 82 | 124 | No hit | No description |
PROSITE profile | PS51294 | 27.706 | 127 | 181 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-17 | 131 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 132 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-13 | 134 | 177 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 134 | 180 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
LRIPSDFHQF HLWSNSASIN LTKLKRISVT SMEIDTQAAA EVCGGGGEVE MVAGGVGEDE 60 NLVMLEDGGG ESKKSLDRVK GPWSPDEDAM LSQLVGNFGA RNWSLIARGI PGRSGKSCRL 120 RWCNQLDPAV KRKPFTDEED RIILQAHSIH GNKWASIARL LPGRTDNAIK NHWNSTLRRR 180 CLELGKSKLE PGTLVEDTSA EKSKASSEET PSYGDAYSVK SSEGKDALWL YAVLLHALVS 240 FTVYNPIDGT ETVCPSPRVA SFPSLPVSNS DAGTSKLLEG GGSELTLMVP QQCGHGCCET 300 SNGMAAVNSL LGPEFMDHVE PPSFTSHELA ALAADISSVA WSKSGLESSN IKAMDNMACG 360 LLCSNSTNER GILETM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-41 | 77 | 180 | 4 | 107 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059407 | 0.0 | KF059407.1 Salvia miltiorrhiza MYB-related transcription factor (MYB53) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094946.1 | 1e-164 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 3e-84 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A059PSP0 | 0.0 | A0A059PSP0_SALMI; MYB-related transcription factor | ||||
STRING | Migut.J00247.1.p | 1e-140 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 3e-82 | myb domain protein 1 |
Publications ? help Back to Top | |||
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