PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019405-RA_Salv
Common NameMYB88
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 278aa    MW: 30578.6 Da    PI: 8.2212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019405-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-171562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l +++  +G g+W++++r  g++R++k+c++rw +yl
  SMil_00019405-RA_Salv 15 RGLWSPEEDEKLMNYISTFGHGCWSSVPRLAGLRRCGKSCRLRWINYL 62
                           788*******************************************97 PP
2Myb_DNA-binding47.15.5e-1568110145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            rg+++ +E  ++v+++k lG++ W+ Ia++++ gRt++++k++w+
  SMil_00019405-RA_Salv  68 RGSFSRQEATIIVELHKVLGNK-WAQIAKHLP-GRTDNEVKNFWN 110
                            899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-25665IPR009057Homeodomain-like
PROSITE profilePS5129424.4711066IPR017930Myb domain
SuperFamilySSF466898.99E-2912109IPR009057Homeodomain-like
SMARTSM007175.4E-131464IPR001005SANT/Myb domain
PfamPF002492.9E-151562IPR001005SANT/Myb domain
CDDcd001674.61E-111862No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2466117IPR009057Homeodomain-like
PROSITE profilePS5129417.94367117IPR017930Myb domain
SMARTSM007173.7E-1467115IPR001005SANT/Myb domain
PfamPF002494.0E-1368111IPR001005SANT/Myb domain
CDDcd001672.36E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGHHHTCCNR QKVKRGLWSP EEDEKLMNYI STFGHGCWSS VPRLAGLRRC GKSCRLRWIN  60
YLRPDLKRGS FSRQEATIIV ELHKVLGNKW AQIAKHLPGR TDNEVKNFWN SSVKKKFVSA  120
NANHHSLSEN VNLGGGGGSS SSDTSILMNN FIPNRRIPLI QPFQSYPLMQ PFSLAPQSFP  180
YLNSLLMAGD LQPPSCNNCP IFDINSASAQ PPFFEDIAGI DASFMAAPPS PLRYLDALVA  240
ELESPIPDSD TSSAASSCSG GGSFFDDAAF VSFWGAQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594420.0KF059442.1 Salvia miltiorrhiza MYB-related transcription factor (MYB88) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SPG33e-69MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A059PSS60.0A0A059PSS6_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-73myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  3. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  4. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]