PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019345-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 280aa    MW: 30398.9 Da    PI: 8.8866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019345-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20128177255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  SMil_00019345-RA_Salv 128 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIEFRG 177
                            59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-23127185No hitNo description
SMARTSM003806.0E-40128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-33128185IPR001471AP2/ERF domain
PfamPF008474.9E-14128177IPR001471AP2/ERF domain
PROSITE profilePS5103225.409128185IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23128187IPR016177DNA-binding domain
PRINTSPR003674.6E-12129140IPR001471AP2/ERF domain
PRINTSPR003674.6E-12151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQRSNKRIKQ EESNSIAATS AATPPLQRLS NEEEVSVMVA ALKNVITGEA ALVNTAHEFR  60
FMSYGRGAAA GDGLFSVSGD METCRFCGIK GCLGCNLFNE EKKAAGGGNA PPPPPAEAAT  120
GKKRKKKNYR GVRQRPWGKW AAEIRDPRKA ARVWLGTFET AEDAARAYDR AAIEFRGPRA  180
KLNFPFSDYT AAASPTVASS SSSQRQKEAA IVAAPKKMMS KQENGGMWEI GSSSNNQSNN  240
DYNFWDLTIG EEDMEQWMTM MDFNNGNSSD SANGGNVQSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-26125186264ATERF1
3gcc_A9e-26125186264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088263.11e-112ethylene-responsive transcription factor ERF109
TrEMBLA0A4D9C0U81e-118A0A4D9C0U8_SALSN; EREBP-like factor
STRINGMigut.B00347.1.p5e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-34redox responsive transcription factor 1