PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019183-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 504aa MW: 56443.7 Da PI: 9.7215

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019183-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.3	1.2e-08	355	393	52	90
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++++trt+Cka+l+v +e++g w + + + HnHel+ SMil_00019183-RA_Salv 355 SYKKQVTRTNCKARLRVIREEEGPWTIFVFFEPHNHELV 393 457899*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50879	11.212	64	194	IPR002156	Ribonuclease H domain
SuperFamily	SSF53098	6.45E-20	66	194	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:3.30.420.10	6.4E-14	68	194	IPR012337	Ribonuclease H-like domain
CDD	cd06222	9.59E-28	70	190	No hit	No description
Pfam	PF13456	4.4E-18	71	191	No hit	No description
Pfam	PF03101	3.1E-6	356	393	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MISPSVKPRC LSSSKLLTKK RILNLHLGHM ANDWKEYLTL RELGVRSRSA PPPDYIDVHW 60 WPPDLNWMKV NTDGSALGAP GRIFAGGVFR DHRAEVRGCF HVKGGSGFAL EAELLAVIKA 120 IAIAESRGWR KLWLESDSTY VVELLRKKSL EVPWRFLTSW KATIASLNNF ELRISHIYRE 180 GNAAADIMAH SSRQEGWWPH SIEAIETALF GVEPAVRRWR HNTLIEQLLG FFAVVLSNTW 240 GAVAAVLSLF GRTLGGQVVL VPGSLLRRCW FYVADAGLPA CFIEVPQEIE NDFEGKECSL 300 SKELIDSDME SEAIKSIRNQ SEKKLQVGSV YDSLDVIYIL YCYPDNKRLV GRIASYKKQV 360 TRTNCKARLR VIREEEGPWT IFVFFEPHNH ELVSLEQSYT LRSARHMSHG NKSVLDALRH 420 AGIKISSAYK FMEKEAARPP RPSPTPESSP AVAATPTATF ARVPSQQSSC RSAPPPPPVS 480 PVSNRRRSSR ADAALASSSS SFFF

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MISPSVKPRC LSSSKLLTKK RILNLHLGHM ANDWKEYLTL RELGVRSRSA PPPDYIDVHW  60
WPPDLNWMKV NTDGSALGAP GRIFAGGVFR DHRAEVRGCF HVKGGSGFAL EAELLAVIKA  120
IAIAESRGWR KLWLESDSTY VVELLRKKSL EVPWRFLTSW KATIASLNNF ELRISHIYRE  180
GNAAADIMAH SSRQEGWWPH SIEAIETALF GVEPAVRRWR HNTLIEQLLG FFAVVLSNTW  240
GAVAAVLSLF GRTLGGQVVL VPGSLLRRCW FYVADAGLPA CFIEVPQEIE NDFEGKECSL  300
SKELIDSDME SEAIKSIRNQ SEKKLQVGSV YDSLDVIYIL YCYPDNKRLV GRIASYKKQV  360
TRTNCKARLR VIREEEGPWT IFVFFEPHNH ELVSLEQSYT LRSARHMSHG NKSVLDALRH  420
AGIKISSAYK FMEKEAARPP RPSPTPESSP AVAATPTATF ARVPSQQSSC RSAPPPPPVS  480
PVSNRRRSSR ADAALASSSS SFFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-10	FAR1-related sequence 5