PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019118-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 356aa    MW: 40145.9 Da    PI: 10.5129
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019118-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3144148199
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  SMil_00019118-RA_Salv  44 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQR 131
                            89***************************966778999*************************************************6 PP

                            -.SS.SEE..EEEEE-S CS
                     B3  85 d.gr.sefelvvkvfrk 99 
                              g+  + +l++ ++r+
  SMil_00019118-RA_Salv 132 GvGElAKDRLFIDWRRR 148
                            65888999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4138150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2941132IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-2542131No hitNo description
SMARTSM010198.7E-2344149IPR003340B3 DNA binding domain
PfamPF023624.0E-2944148IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4144149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSSIRGLTAA TGRVRSRTIR RRCGEAAVRG SSSGVAAVQR EHMFDKVVTP SDVGKLNRLV  60
IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK  120
LDAGDIVSFQ RGVGELAKDR LFIDWRRRPD APDLPPSHHF SFHQRSSSLH HPWSPLFIPP  180
PPPPRDYSHL LHHHYHHHHH PPTGYGPYAY GSVVNGNPCP PGSIVYLRGG GGSGAFGAAA  240
QGQREQMVFE SVPVVQGKAA PALYLLVGGF PDSVLRRWAR RLWEKRRCDA VWGRGRVRPG  300
GKLTCGERER VGCERERVEC VCVCDVAIPA ATSIFRSPEF KIVSKLNNFL NWCIKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-64391493114B3 domain-containing transcription factor NGA1
5os9_B1e-64391493114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547752.11e-113B3 domain-containing transcription factor NGA1-like
SwissprotQ8LMR93e-74Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2G9G2U21e-113A0A2G9G2U2_9LAMI; Uncharacterized protein
TrEMBLA0A4D8ZUT71e-114A0A4D8ZUT7_SALSN; Uncharacterized protein
STRINGXP_009758550.17e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-67B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]