PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019107-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 636aa MW: 70786.7 Da PI: 7.041

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019107-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	423	2.5e-129	252	623	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++l+++cAe + ++ ++++++Larl elasp+g+p++Rl+ayfteALa r+ar +++++++ pp++ + + ++ +al+++++vs SMil_00019107-RA_Salv 252 LINLVVACAEQIGCKNIAAISHCLARLGELASPRGSPLHRLIAYFTEALALRVARLWPHVFHITPPRDLD--RLDDDHNALRVLNQVS 337 57899************************************************************998..5999999***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 Pi +f h+t+N+ +l+++eg++rvHiiDfdi+qGlQWp+L+q+LasR ++p ++RiTg+g+ sk+el etg+rLa fAe++g+pf SMil_00019107-RA_Salv 338 PITRFVHFTCNEILLRELEGKDRVHIIDFDIKQGLQWPSLFQSLASRVNPPSHVRITGIGE----SKQELIETGDRLAGFAEAFGLPF 421 *********************************************************....******************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 ef++ v++rled++l++L+vk++Ea++ n+v+qlh++l + + + +++L l++s++++vvv++eqea hn++++ +r++++l+yy SMil_00019107-RA_Salv 422 EFHP-VVDRLEDVRLWMLHVKEKEAVVANCVFQLHKMLYDATGGA--LRDFLGLIRSTNAQVVVMAEQEAGHNEATLDARLFNSLKYY 506 .7****************************6554444..589********************************** PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351 sa+fds++++lp +s +rikvE++ +grei++++aceg++r erhe++ekW++ +e+ GF+ v +se+++ q +++l++++ ++ yrv SMil_00019107-RA_Salv 507 SAVFDSVDSSLPLDSTARIKVEEM-FGREIRSIIACEGRQRGERHERFEKWHQLMEQGGFRCVGVSEREVLQGEMMLKMYSsNQNYRV 593 ********************.****************************************************9899* PP GRAS 352 e.......eesgslvlgWkdrpLvsvSaWr 374 + s +l+l W+++pL++vSaWr SMil_00019107-RA_Salv 594 QvaasasnTASSCLTLSWSEQPLYAVSAWR 623 76655444499****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.781	226	595	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.5E-127	252	623	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MLAGCSSTLV SPRHRLRSEA SAQFQACHIP AMSTQRLDLP CSFGRKEASR PQSVRPVGIS 60 VEKPIEQSKG SSLRQNIRLP PVAAESRRER GDEFWERSKK KRYAAADEGG NYMSRVKKRK 120 TGNGNGNEDL GQQLRSSEDF WFHEGEERVC FDPPPPLPPL SSIPWFDSVV TEVTDLGKSK 180 DVQRVDPHPH KEASASGSGS SSTSSGGHTL APGVVERGNG SSSRNPSEVA GHNHNHNGSQ 240 REQEQEHEYV ELINLVVACA EQIGCKNIAA ISHCLARLGE LASPRGSPLH RLIAYFTEAL 300 ALRVARLWPH VFHITPPRDL DRLDDDHNAL RVLNQVSPIT RFVHFTCNEI LLRELEGKDR 360 VHIIDFDIKQ GLQWPSLFQS LASRVNPPSH VRITGIGESK QELIETGDRL AGFAEAFGLP 420 FEFHPVVDRL EDVRLWMLHV KEKEAVVANC VFQLHKMLYD ATGGALRDFL GLIRSTNAQV 480 VVMAEQEAGH NEATLDARLF NSLKYYSAVF DSVDSSLPLD STARIKVEEM FGREIRSIIA 540 CEGRQRGERH ERFEKWHQLM EQGGFRCVGV SEREVLQGEM MLKMYSSNQN YRVQVAASAS 600 NTASSCLTLS WSEQPLYAVS AWRPAVDAAG GSSSLF

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MLAGCSSTLV SPRHRLRSEA SAQFQACHIP AMSTQRLDLP CSFGRKEASR PQSVRPVGIS  60
VEKPIEQSKG SSLRQNIRLP PVAAESRRER GDEFWERSKK KRYAAADEGG NYMSRVKKRK  120
TGNGNGNEDL GQQLRSSEDF WFHEGEERVC FDPPPPLPPL SSIPWFDSVV TEVTDLGKSK  180
DVQRVDPHPH KEASASGSGS SSTSSGGHTL APGVVERGNG SSSRNPSEVA GHNHNHNGSQ  240
REQEQEHEYV ELINLVVACA EQIGCKNIAA ISHCLARLGE LASPRGSPLH RLIAYFTEAL  300
ALRVARLWPH VFHITPPRDL DRLDDDHNAL RVLNQVSPIT RFVHFTCNEI LLRELEGKDR  360
VHIIDFDIKQ GLQWPSLFQS LASRVNPPSH VRITGIGESK QELIETGDRL AGFAEAFGLP  420
FEFHPVVDRL EDVRLWMLHV KEKEAVVANC VFQLHKMLYD ATGGALRDFL GLIRSTNAQV  480
VVMAEQEAGH NEATLDARLF NSLKYYSAVF DSVDSSLPLD STARIKVEEM FGREIRSIIA  540
CEGRQRGERH ERFEKWHQLM EQGGFRCVGV SEREVLQGEM MLKMYSSNQN YRVQVAASAS  600
NTASSCLTLS WSEQPLYAVS AWRPAVDAAG GSSSLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-66	241	624	8	380	Protein SCARECROW
5b3h_A	1e-65	241	624	7	379	Protein SCARECROW
5b3h_D	1e-65	241	624	7	379	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	119	KKRYAAADEGGNYMSRVKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072178.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A4D8Z695	0.0	A0A4D8Z695_SALSN; Uncharacterized protein
STRING	Gorai.008G243900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5568	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein