PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018998-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 343aa MW: 38689.5 Da PI: 6.8973

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018998-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	7	30	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia ++ gRt++++k++w+++ SMil_00018998-RA_Salv 7 RWSLIAGRLS-GRTANDVKNFWNSH 30 5*******.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.194	1	35	IPR017930	Myb domain
CDD	cd00167	9.93E-5	3	31	No hit	No description
SuperFamily	SSF46689	1.06E-5	6	34	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-9	6	31	IPR009057	Homeodomain-like
Pfam	PF13966	6.5E-12	232	309	IPR026960	Reverse transcriptase zinc-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MYHQFIRWSL IAGRLSGRTA NDVKNFWNSH ISKRAVEGVK SITKSNIVRP RPRTFSNARP 60 PVWSTQLTGS NSSSSTTKHT NHDPTEANDG VENPNMERRS SLLEEDLDDC MRLWGDLLMM 120 TENNSFQLSN GEIADHWNHS ADQDRLCDDL SFDADMSGER AAAVWWTLPL APPLITGGNS 180 RWYLSAAAGM EITDDKITGG LSPPLMPTGY HGGSVDKAQV ALNSWGGENL TAEAYNCFRD 240 KGEALFWHKA IWRNYIPPRC SITLWLALQN WLKTVDRLQG VPKLYAICNT YDESLEHLYF 300 KCVGTSKAWR EIKKMAPIEG THVNYTKCHQ ASLQKEEGIK DLQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MYHQFIRWSL IAGRLSGRTA NDVKNFWNSH ISKRAVEGVK SITKSNIVRP RPRTFSNARP  60
PVWSTQLTGS NSSSSTTKHT NHDPTEANDG VENPNMERRS SLLEEDLDDC MRLWGDLLMM  120
TENNSFQLSN GEIADHWNHS ADQDRLCDDL SFDADMSGER AAAVWWTLPL APPLITGGNS  180
RWYLSAAAGM EITDDKITGG LSPPLMPTGY HGGSVDKAQV ALNSWGGENL TAEAYNCFRD  240
KGEALFWHKA IWRNYIPPRC SITLWLALQN WLKTVDRLQG VPKLYAICNT YDESLEHLYF  300
KCVGTSKAWR EIKKMAPIEG THVNYTKCHQ ASLQKEEGIK DLQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18322	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	7e-13	myb domain protein 113