PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018915-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 506aa    MW: 57503.1 Da    PI: 6.5858
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018915-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.31.3e-21200251153
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                            kpr++Wt +LH++Fv+av+++ G ek  Pk+ilelm+v+ Lt+e+v+SHLQ+ 
  SMil_00018915-RA_Salv 200 KPRVVWTFDLHQKFVKAVNHI-GLEKVGPKKILELMEVPWLTRENVASHLQRL 251
                            79*******************.9****************************75 PP
2Response_reg39.23.6e-14481477109
                            SHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
           Response_reg   7 eplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                            +++  + +++++e   + +v  + +++e l+ l +++  +D+++ D +  ++d +++l++   + +++p+iv++  g+++ + + ++ 
  SMil_00018915-RA_Salv  48 HDICISDFCWFCE---F-SVSMCNSAQESLDVLGKQKdgFDIVISDAKVADVDDFNFLEQVVHK-MNIPVIVMSEDGDPSRMMKGVEH 130
                            5555556666666...7.889999999999999777778**********************554.48********************* PP

                            TESEEEESS--HHHHHH CS
           Response_reg  93 GakdflsKpfdpeelvk 109
                            Ga ++l Kp+  +el++
  SMil_00018915-RA_Salv 131 GACEYLQKPIRTRELRN 147
                            **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.97E-2119160IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-2719168No hitNo description
SMARTSM004482.8E-720149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.29521153IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.84E-1323153No hitNo description
PfamPF000721.3E-961148IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466895.02E-14197251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-22199252IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-20200251IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVLGSNSSTA LRSDSFPAGL RVLVVDHDPA YLNILHKMLL KCKYEDEHDI CISDFCWFCE  60
FSVSMCNSAQ ESLDVLGKQK DGFDIVISDA KVADVDDFNF LEQVVHKMNI PVIVMSEDGD  120
PSRMMKGVEH GACEYLQKPI RTRELRNIWQ HVFRKRIHEV KCVEPKQDPT PHNSDANNIV  180
IANKRKDHDN TTHDPTTLKK PRVVWTFDLH QKFVKAVNHI GLEKVGPKKI LELMEVPWLT  240
RENVASHLQR LKYGAHGHFQ DLLLRPGLGA EFVKVQKENE VNAAACNEVK LSDFPSNSVS  300
LQQNIVINGI HHNHSRMAVP MPMADDPPPL PPSRMDVSKI QAHYTWPNGD LNPHFQPDHP  360
FPLPLAIRRE DQPIEANLSS KNRSYAIGTD HALLSVTQHL RHSHDVPLPR YDQDQNLHNS  420
MESSFKNMNM IVGTGSSSAP LNAELNAYSS SSDHIYHLHN PHQLVSFGCT NLLPTDHVPP  480
ELYDFQKFED EYDCNAQQTN QGLYFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17196254159ARR10-B
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-69response regulator 11