PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018907-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 250aa    MW: 27384.4 Da    PI: 5.8125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018907-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15801221156
                    AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  SMil_00018907-RA_Salv  80 HWGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 122
                            6**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.41472129IPR001471AP2/ERF domain
SMARTSM003803.2E-2678135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2579130IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1979130IPR016177DNA-binding domain
PfamPF008471.7E-980122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MANIHDFNAP HALSQLILST NSNTLDSIFS YCEAANSVAA AQAATELEFP LGSSVYFRQR  60
DLLRKFSNEN PRIPAADPRH WGKWVAEIRL PQNRMRVWLG TYDTAEAAAY AYDRAAYKLR  120
GEYARLNFPN LRDPARIGLG DGARLAALKS AVDAKIQAIC QKAKRGRKMK AAVAESSSAS  180
TTTTTEENNK AAEESPSPSS SVANDERWSA GGGAEEDAPW SGGDAESREW YSLARLPSFD  240
PELIWDVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-14791291263ATERF1
3gcc_A7e-14791291263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042846e-44AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAK3717296e-44AK371729.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2140I18.
GenBankAK3741326e-44AK374132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F04.
GenBankAP0149616e-44AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-44CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8376116e-44CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence.
GenBankCT8416876e-44CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence.
GenBankJX4243126e-44JX424312.1 Triticum durum AP2/ERF domain-containing transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101035.19e-88LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-52ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A4D9AEW61e-106A0A4D9AEW6_SALSN; EREBP-like factor
STRINGMigut.A00662.1.p1e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]