PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018899-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 546aa    MW: 61605.5 Da    PI: 9.6268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018899-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1617991199
                           HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           + s rl +p +f++ ++g    + t +l  +sg+sW v li   +  + +l +GW +Fvk++ L+ gD++vF++dg+s+f  ++++f++
  SMil_00018899-RA_Salv 17 FCSERLNIPCNFVKYMEGTA--PGTAVLVGPSGNSWFVDLILVET--GLFLNDGWADFVKDHFLEHGDSIVFRYDGDSNF--TLQIFDR 99
                           66889********6557664..449***************65555..599**************************9999..9999987 PP
2B354.71.8e-17230324198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                            f+kv+++ + + s  l +p +fa+eh   ++++++++l++++g+sW+v+ i  +k + ++++ +GW +Fv++n++++gD+++F+l   
  SMil_00018899-RA_Salv 230 FLKVMKRFNISGSYTLNVPYQFATEHL--PKCKVKVVLRNLRGESWTVNSIPtTKVQTSHTFCGGWLSFVRDNHIDVGDICIFELLL- 314
                            6788877788888899**********6..34999****************875666666*************************764. PP

                            SEE..EEEEE- CS
                     B3  88 sefelvvkvfr 98 
                             +fe+ v+++r
  SMil_00018899-RA_Salv 315 -KFEMQVRILR 324
                            .8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-225102IPR015300DNA-binding pseudobarrel domain
CDDcd100179.42E-17798No hitNo description
PROSITE profilePS5086314.1427100IPR003340B3 DNA binding domain
SMARTSM010192.3E-119100IPR003340B3 DNA binding domain
PfamPF023622.6E-141999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-23221324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-22223325IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-19228324No hitNo description
SMARTSM010196.8E-14230326IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999230326IPR003340B3 DNA binding domain
PfamPF023622.4E-15230324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MWNLRRPHFL LGFDPSFCSE RLNIPCNFVK YMEGTAPGTA VLVGPSGNSW FVDLILVETG  60
LFLNDGWADF VKDHFLEHGD SIVFRYDGDS NFTLQIFDRS MCEKQAAFTA QSSQDVSRYD  120
SNVVKKRERE RSALLDSIIE GVPKKMRCSQ LQSDSMCDAH ENHTNLVNAE DWMQQADGNS  180
NMKNAITVAL PLAAVPRDYA DRRTTNLDIL LSASEAERIA QSFKSSFPSF LKVMKRFNIS  240
GSYTLNVPYQ FATEHLPKCK VKVVLRNLRG ESWTVNSIPT TKVQTSHTFC GGWLSFVRDN  300
HIDVGDICIF ELLLKFEMQV RILRVGKEGI DGHNGEADLR GRSNGCSTTS NKMSRRKSKK  360
KIETSHSIKG SAICSLSNNC VTESEILKRF GSLEKQGSLK GCMSMKSAPE EKMAAQYFVS  420
SYPHFVRVMK KFNISGSYTL DFPSLTLLVG YESTQLAQMR TSRARSRVAV RRAQSSHRSA  480
IYWALSIRAR YSLVALIACA IEKSACNVLK NDLKQRLNAA LKRCGRNRIP FGKWRSHRCC  540
ENSWAE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083781.10.0B3 domain-containing protein Os01g0723500
RefseqXP_020551022.10.0B3 domain-containing protein Os01g0723500
TrEMBLA0A4D9B5R60.0A0A4D9B5R6_SALSN; Uncharacterized protein
STRINGMigut.C00649.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-16B3 family protein