PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018880-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 401aa MW: 44337.7 Da PI: 8.9548

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018880-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	266.6	8.4e-82	97	342	30	296
GRAS 30 laspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDf 117 ++sp+gd+++Rl++ ft+AL+ rl+r e+ ++++ +++ +++++P+++fs+ltaNqaIlea+eg++++Hi+Df SMil_00018880-RA_Salv 97 NSSPYGDSTERLVHQFTKALRLRLNRG-----------EQGCNDEALLQSSYLSLNQITPFIRFSQLTANQAILEAIEGQQAIHILDF 173 69**********************2...........2222334455567788****************************** PP GRAS 118 disqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205 di++G+QWp+L+qaLa+R +pp+lRiTg g + + l++tg+rLakfA++lg++f+f++l++++ ++ +++ + p+E+laVn SMil_00018880-RA_Salv 174 DIMHGVQWPPLMQALAER-FPPPTLRITGTGT----DLDILRRTGDRLAKFAHSLGLRFQFQPLISDESISV-TSSVVLLPHETLAVN 255 *************9.799******....9**********************977766666.7888899**** PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +v+ lhrll+++ l+ +L+ +k + P+vv ++e+ea+hn++ F +rf+ea+++y+a+fdslea+lp++s+er vE+ ++gre SMil_00018880-RA_Salv 256 CVHYLHRLLKDRDRLHL----FLHRIKAMGPRVVALAEREANHNHPVFQQRFVEAVDHYAAVFDSLEATLPPNSRERLGVEQIWFGRE 339 *****66666666....***************************************************************** PP GRAS 294 ivn 296 i++ SMil_00018880-RA_Salv 340 ISE 342 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.731	36	401	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-79	97	342	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MQEPDARTRA ALRAWGCGSA GRSLRLLFAP RCGCCPYNLI TGGGGAVSAK CVSPPDPTSE 60 LGVAAHPHAA APHQLRGADL PLRCLRRPPP DRHSVSNSSP YGDSTERLVH QFTKALRLRL 120 NRGEQGCNDE ALLQSSYLSL NQITPFIRFS QLTANQAILE AIEGQQAIHI LDFDIMHGVQ 180 WPPLMQALAE RFPPPTLRIT GTGTDLDILR RTGDRLAKFA HSLGLRFQFQ PLISDESISV 240 TSSVVLLPHE TLAVNCVHYL HRLLKDRDRL HLFLHRIKAM GPRVVALAER EANHNHPVFQ 300 QRFVEAVDHY AAVFDSLEAT LPPNSRERLG VEQIWFGREI SESWRRRAKQ EGAAREIPIV 360 GDDAEKRGIR QRGAEPLRAV AGEAAAAPPL PIGRLPPPHP Q

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MQEPDARTRA ALRAWGCGSA GRSLRLLFAP RCGCCPYNLI TGGGGAVSAK CVSPPDPTSE  60
LGVAAHPHAA APHQLRGADL PLRCLRRPPP DRHSVSNSSP YGDSTERLVH QFTKALRLRL  120
NRGEQGCNDE ALLQSSYLSL NQITPFIRFS QLTANQAILE AIEGQQAIHI LDFDIMHGVQ  180
WPPLMQALAE RFPPPTLRIT GTGTDLDILR RTGDRLAKFA HSLGLRFQFQ PLISDESISV  240
TSSVVLLPHE TLAVNCVHYL HRLLKDRDRL HLFLHRIKAM GPRVVALAER EANHNHPVFQ  300
QRFVEAVDHY AAVFDSLEAT LPPNSRERLG VEQIWFGREI SESWRRRAKQ EGAAREIPIV  360
GDDAEKRGIR QRGAEPLRAV AGEAAAAPPL PIGRLPPPHP Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-43	98	396	49	350	Protein SCARECROW
5b3h_A	3e-43	98	396	48	349	Protein SCARECROW
5b3h_D	3e-43	98	396	48	349	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095666.1	1e-147	scarecrow-like protein 18
Swissprot	Q9ZWC5	9e-80	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A4D9BBF0	1e-152	A0A4D9BBF0_SALSN; Uncharacterized protein
STRING	Migut.M01571.1.p	1e-138	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	5e-73	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]