PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00018821-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 241aa MW: 26254.1 Da PI: 9.2199 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.2 | 2.4e-40 | 21 | 80 | 4 | 63 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +alkcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss SMil_00018821-RA_Salv 21 QALKCPRCDSANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 80 789*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 5 | 75 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.2E-34 | 21 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MLGCNKSQQD QNKKPRPADM QALKCPRCDS ANTKFCYYNN YSLSQPRYFC KSCRRYWTKG 60 GTLRNVPVGG GCRKNKRSSS SSSSSSSSKR SHDPPPLPSP IPSMPPLSYN SNDLNLAIAR 120 LQKQNSAHLG GFLENQSAAN NGMHNLYYGN VEVDQNVGMA TSGPREMGMP SYDEYGGGTA 180 ATAVKQELCG GRDGDGRILW GFPWQNMSTG DGNGSDFDST RLNWNGIGSS NWQGLLNSPL 240 T |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 3e-39 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. | |||
GenBank | AM084360 | 3e-39 | AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089362.1 | 9e-93 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A4D9AWU8 | 1e-109 | A0A4D9AWU8_SALSN; Uncharacterized protein | ||||
STRING | XP_009622795.1 | 2e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-40 | TARGET OF MONOPTEROS 6 |