PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00018740-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 17986.6 Da PI: 10.2414 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.5e-40 | 31 | 132 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p+++r+da+ ++ yeA+ar++dPvyG+v++i +lqqq+ SMil_00018740-RA_Salv 31 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPPNRRHDAVVTISYEAQARLSDPVYGCVSTIIALQQQV 118 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkeel 101 ++l+ael++++++l SMil_00018740-RA_Salv 119 ASLQAELSVVQTQL 132 *********99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.291 | 30 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-39 | 31 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDVPPQDDGT SDSRRKGPGK RSAEAPPPNA PCGACKFLRR KCISGCIFAP HFGSDQGAAR 60 FAAVHKVFGA SNVSKLLLHI PPNRRHDAVV TISYEAQARL SDPVYGCVST IIALQQQVAS 120 LQAELSVVQT QLMNSRYVMA NAFQIHHSSS SSSRFVIPTL LRLRTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-40 | 26 | 137 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-40 | 26 | 137 | 6 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070190.1 | 8e-88 | LOB domain-containing protein 20 | ||||
Refseq | XP_020547496.1 | 8e-88 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-73 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A4D8ZFX6 | 2e-94 | A0A4D8ZFX6_SALSN; Uncharacterized protein | ||||
STRING | XP_009779769.1 | 7e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-75 | LOB domain-containing protein 20 |