PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018650-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 299aa    MW: 30754.8 Da    PI: 10.161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018650-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-063357226
                           -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                           k ++C  f+    C++G++C+F H 
  SMil_00018650-RA_Salv 33 KSKPCTKFFSIAGCPFGENCHFLHH 57
                           678999999999************6 PP
2zf-CCCH25.81.9e-0899124227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+ C+ +     Ck+G++C+FaHg+
  SMil_00018650-RA_Salv  99 KTKVCNKYKTAEGCKFGNKCNFAHGE 124
                            899*********************96 PP
3zf-CCCH30.46.4e-10267291126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt+lC +f + G C +GdrC+FaHg
  SMil_00018650-RA_Salv 267 FKTKLCENFGK-GSCTFGDRCHFAHG 291
                            69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.133158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9343159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-63258IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-73357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-896128IPR000571Zinc finger, CCCH-type
SMARTSM003560.007897124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15997125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-1397128IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-599124IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.13E-15160237IPR004088K Homology domain, type 1
SMARTSM003223.7E-13166236IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.4E-16166235IPR004088K Homology domain, type 1
PROSITE profilePS5008414.676167231IPR004088K Homology domain, type 1
CDDcd001055.94E-16169231No hitNo description
PfamPF000131.9E-12169233IPR004088K Homology domain, type 1
SuperFamilySSF902295.23E-8266296IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6266292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817266293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-14266297IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDTRKRGRAE FANGGFKKPK PEMDSLSSGI GSKSKPCTKF FSIAGCPFGE NCHFLHHVPG  60
GYNAVAQMMN LAPAPTPRPA GGPPPAHQNG HGSAPAAVKT KVCNKYKTAE GCKFGNKCNF  120
AHGEWELGKP IMPSHDNPRA TGPMPPGRFS ARPEPPVPGP AASFGATATA KISVDASLAG  180
AVIGKGGVNS KQICRQTGTK LSIRDHETNP NLRNIELEGT FEQIQQASAM VRELIVSIGS  240
GGGSGGPGRA FGGGGGGAAS TGGGGNFKTK LCENFGKGSC TFGDRCHFAH GAAELRKTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-162zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-108C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D8YL701e-156A0A4D8YL70_SALSN; Uncharacterized protein
STRINGMigut.K00037.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-59C3H family protein