PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018615-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 334aa    MW: 36854.9 Da    PI: 7.6395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018615-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-16129174147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l+++v+ +G+ +W++Ia ++  gR++k+c++rw++ 
  SMil_00018615-RA_Salv 129 RGHWRPAEDSKLKELVAVYGPQNWNLIADKLE-GRSGKSCRLRWFNQ 174
                            899*****************************.***********996 PP

2Myb_DNA-binding574.3e-18181225147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ +
  SMil_00018615-RA_Salv 181 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 225
                            678*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.662124175IPR017930Myb domain
SMARTSM007171.3E-13128177IPR001005SANT/Myb domain
PfamPF002493.9E-15129174IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28129222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-25130182IPR009057Homeodomain-like
CDDcd001671.64E-12132173No hitNo description
PROSITE profilePS5129427.691176230IPR017930Myb domain
SMARTSM007171.3E-14180228IPR001005SANT/Myb domain
PfamPF002491.7E-14181224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-21183229IPR009057Homeodomain-like
CDDcd001671.88E-11183226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
LSETQNETKP QNKTTNPCAH FFLNFLNFIP NFQVYIYIYM GSKSSSVTYN GSNFHSSSMV  60
FPDMRALSIA AGFSCSDDKG SDSGGDHLID LNAALESDDQ DCSDMHGSST GGGGGGGRDS  120
SGNGKICARG HWRPAEDSKL KELVAVYGPQ NWNLIADKLE GRSGKSCRLR WFNQLDPRIN  180
RRAFTEEEEE RLMAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVVMARKY REQSTAHRRR  240
KMGQFVFRRA DAAAAADAGY WAPQTSLAFF QGGDVRQSTG QWEESNLYYP TVVSGFQMSH  300
YHFPVSQAAA AAAESGSASA TEAPFIDFLG VGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341292297107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593690.0KF059369.1 Salvia miltiorrhiza MYB-related transcription factor (MYB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075638.11e-103myb-like protein Q
TrEMBLA0A059PRQ81e-150A0A059PRQ8_SALMI; MYB-related transcription factor
STRINGMigut.E00083.1.p3e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-75myb domain protein 105