PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00018615-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 36854.9 Da PI: 7.6395 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.7e-16 | 129 | 174 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia ++ gR++k+c++rw++ SMil_00018615-RA_Salv 129 RGHWRPAEDSKLKELVAVYGPQNWNLIADKLE-GRSGKSCRLRWFNQ 174 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.3e-18 | 181 | 225 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ + SMil_00018615-RA_Salv 181 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 225 678*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.662 | 124 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 128 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 129 | 174 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-28 | 129 | 222 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 130 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-12 | 132 | 173 | No hit | No description |
PROSITE profile | PS51294 | 27.691 | 176 | 230 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 180 | 228 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 181 | 224 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 183 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-11 | 183 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
LSETQNETKP QNKTTNPCAH FFLNFLNFIP NFQVYIYIYM GSKSSSVTYN GSNFHSSSMV 60 FPDMRALSIA AGFSCSDDKG SDSGGDHLID LNAALESDDQ DCSDMHGSST GGGGGGGRDS 120 SGNGKICARG HWRPAEDSKL KELVAVYGPQ NWNLIADKLE GRSGKSCRLR WFNQLDPRIN 180 RRAFTEEEEE RLMAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVVMARKY REQSTAHRRR 240 KMGQFVFRRA DAAAAADAGY WAPQTSLAFF QGGDVRQSTG QWEESNLYYP TVVSGFQMSH 300 YHFPVSQAAA AAAESGSASA TEAPFIDFLG VGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-34 | 129 | 229 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059369 | 0.0 | KF059369.1 Salvia miltiorrhiza MYB-related transcription factor (MYB15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075638.1 | 1e-103 | myb-like protein Q | ||||
TrEMBL | A0A059PRQ8 | 1e-150 | A0A059PRQ8_SALMI; MYB-related transcription factor | ||||
STRING | Migut.E00083.1.p | 3e-94 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-75 | myb domain protein 105 |