PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00018530-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23130.4 Da PI: 5.9222 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.8e-43 | 56 | 155 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da++s+vyeA+ar+rdPvyG++g i +lq+q++ SMil_00018530-RA_Salv 56 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPEDQRADAVNSMVYEANARLRDPVYGCAGAICHLQKQIS 143 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +l+aela++++e SMil_00018530-RA_Salv 144 ELQAELARAQAE 155 ********9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.332 | 55 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-43 | 56 | 153 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
LPPHPTPPPH RDIIMAYSGN SSANAAAAEG SISAVSPTSS SSPPSSPPSP PVILSPCAAC 60 KILRRRCVEK CVLAPYFPPT EPLKFTIAHR VFGASNIIKL LQELPEDQRA DAVNSMVYEA 120 NARLRDPVYG CAGAICHLQK QISELQAELA RAQAEILNIQ CQNSSLFELI CKQMSAKTHN 180 DEENPQPPQP FHDNSAFLLD ESILGVAWEP LWT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 48 | 161 | 3 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 48 | 161 | 3 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077047.1 | 3e-90 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D9AES9 | 1e-102 | A0A4D9AES9_SALSN; Uncharacterized protein | ||||
STRING | Migut.F02029.1.p | 3e-90 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-62 | LOB domain-containing protein 1 |