PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018430-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 482aa    MW: 54270.1 Da    PI: 6.9947
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018430-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.42.5e-2865152191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++     +r+ ++++t+Cka+++vkk++dgkw+++++++eHnHe
  SMil_00018430-RA_Salv  65 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---VSRRPSVKKTDCKASMHVKKKRDGKWYIHEFVKEHNHE 149
                            5****************************************999887...77778899****************************** PP

                   FAR1  89 lap 91 
                            l p
  SMil_00018430-RA_Salv 150 LLP 152
                            975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-2665152IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.027211247IPR007527Zinc finger, SWIM-type
PfamPF044345.1E-8211244IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-8222249IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVDFEDNVGG GEQSLALNVV DIVDVSKSRE GQVSSSSRRD VVGIEGDSFE PHDGIEFDSH  60
EAAYSFYQEY AKSMGFTTSI KNSRRSKKTK EFIDAKFACS RYGVTPESES GVSRRPSVKK  120
TDCKASMHVK KKRDGKWYIH EFVKEHNHEL LPALAYHFRI HRNVKLAEKS NIDILYAIEV  180
LGVVGCHPKK EKEYGGSTTF RVDDCEKNEN FVVTWNEGKS EVSCSCLMFE YKGFLCRHAM  240
IVLQICGLSS IPSQYILKRW MKDAKGKQLL VEGTERIQNR IQRYNDLCKR AIGLGEEGSL  300
SEENYNIACR ALVEALKSCV HINNENPVEC SSNTAGLRFT EEEDLLLPPA KTIKKKNANK  360
KRKTQPEPEA VAIDTQDSLH QMEHLSSEEI PVNGYYGSQQ HVHGLLNLME PPNDGFYVGH  420
QTMQGLGQLH SLASSHDSFY GAHQQSMPAL GHLDFRQPTF TYGMQDDQSV RPAQLHGTAR  480
HA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085456.11e-165protein FAR-RED IMPAIRED RESPONSE 1
RefseqXP_011085457.11e-165protein FAR-RED IMPAIRED RESPONSE 1
SwissprotQ9SWG31e-105FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A0B0NR120.0A0A0B0NR12_GOSAR; Far-red impaired response 1-like protein
STRINGMigut.H01263.1.p1e-162(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-95FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]