PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018390-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 333aa    MW: 36206.7 Da    PI: 6.7025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018390-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431972351255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  SMil_00018390-RA_Salv 197 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 235
                            6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.325185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-6195239No hitNo description
SuperFamilySSF474592.75E-10195247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7199241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
LYQEKILFSF ILLFCERDMN EGIVQSSSVQ QMVGAGSNNW FTTNSLLAAT PPPNHTPHHS  60
APPLSWAVSQ ELPHSWSQLV LGFGGEEDKG GLNHMQLKNV ENWEQQLVSN SSISSADAKR  120
ENSAASYAYG AGNLEFTATS TNCLSPPKSC VTTSSMCTDM FGFSSKSSEI LMKCNGGAAK  180
KSKTNPTTSA QSGIKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQRQIEA  240
LSLPYLATGS GNITHQQPVK RESGSCLFPE HPGQLLNESQ RKRKAISEEE CDEEAKKDLK  300
SRGLCLVPLS CTVDFGSENG ADYWAPSFAG NFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078299.11e-124transcription factor bHLH68
SwissprotQ8S3D12e-66BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A445KSI11e-109A0A445KSI1_GLYSO; Transcription factor bHLH68 isoform B
TrEMBLK7KRP11e-109K7KRP1_SOYBN; Uncharacterized protein
STRINGGLYMA05G35610.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]