PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018386-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 305aa MW: 33389.7 Da PI: 9.4725

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018386-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.3e-14	104	148	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky SMil_00018386-RA_Salv 104 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 148 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.048	97	153	IPR017930	Myb domain
SuperFamily	SSF46689	4.11E-17	99	154	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-16	100	151	IPR006447	Myb domain, plants
SMART	SM00717	4.6E-9	101	151	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-11	104	148	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-9	104	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-10	104	148	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
LHHFIHFTQS KFQFPSISER EIMSQSSESP SSAATGGEIM LFGVRVRVDP MRKSVSMNNL 60 SEYEPVVNNG NEIPKDAADA GYASADEAVP HPSAGNRERK RGIPWTEEEH KLFLVGLQKV 120 GKGDWRGISR NYVKTRTPTQ VASHAQKYFL RRSNINRRRR RSSLFDITTD SVTAMPIEEA 180 AKNHHQESPL PPPTTVPLPI TSNGSNGFSV VPFPVTVSPV MFTMQSGNTA IAQTEVAKNS 240 SPTMLVCPVP CSSTMVDLNL RQHVVVEPSP LSLRLSLSSG QDQPAASAFQ MMQGFKNGDS 300 SISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071772.1	1e-116	transcription factor MYB1R1
Swissprot	Q2V9B0	1e-78	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A4D9A626	1e-121	A0A4D9A626_SALSN; Uncharacterized protein
STRING	Migut.D01891.1.p	6e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-47	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]