PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018249-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 329aa    MW: 37124.9 Da    PI: 9.1313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018249-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-1670117148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT++Ed +lv +v+++G ++W+ +a+  g++Rt+k+c++rw +yl
  SMil_00018249-RA_Salv  70 KGPWTEQEDTQLVFYVNLFGDRRWDFVAKVSGLKRTGKSCRLRWVNYL 117
                            79********************************************97 PP
2Myb_DNA-binding50.74.1e-16123168148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+ E+ l v++  ++G++ W++Iar+++ gRt++++k++w++++
  SMil_00018249-RA_Salv 123 RGKMTPNEERLVVELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 168
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.87865117IPR017930Myb domain
SuperFamilySSF466894.12E-2868164IPR009057Homeodomain-like
SMARTSM007172.4E-1369119IPR001005SANT/Myb domain
PfamPF002491.6E-1470117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2071124IPR009057Homeodomain-like
CDDcd001674.57E-1072117No hitNo description
PROSITE profilePS5129425.955118172IPR017930Myb domain
SMARTSM007179.9E-15122170IPR001005SANT/Myb domain
PfamPF002497.1E-14123167IPR001005SANT/Myb domain
CDDcd001677.98E-11125168No hitNo description
Gene3DG3DSA:1.10.10.603.2E-22125171IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LQTTCMVLIP SSITFKSLIN LLNSNPLPHA EMPSIYTHII TPHTISILHP PTHTQRYQEK  60
MKMEKEEVRK GPWTEQEDTQ LVFYVNLFGD RRWDFVAKVS GLKRTGKSCR LRWVNYLHPG  120
LKRGKMTPNE ERLVVELQSK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQESKKKKG  180
SSSSSSSSTT TSSSSSSSSS NSSSSSAPNS PRPGDSAPAK GKPAGAEGER SFYDTGGVGL  240
AATAASLVVE EGNKVYSMDD LWKEFEFPEE NCALTAQTVA SPIWDYCPND SLWCMSEEES  300
KMLMMQQQQQ QPVGDHHFQS FPFCNYMIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-266717224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593990.0KF059399.1 Salvia miltiorrhiza MYB-related transcription factor (MYB45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089823.11e-109transcription factor MYB48 isoform X1
SwissprotQ9LX823e-78MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059PRS81e-168A0A059PRS8_SALMI; MYB-related transcription factor
STRINGPOPTR_0009s03240.11e-88(Populus trichocarpa)
STRINGXP_002531120.19e-89(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-73myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]