PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018130-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 254aa MW: 28992.6 Da PI: 7.6391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018130-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.3e-18	62	115	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k SMil_00018130-RA_Salv 62 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 115 456899***********************************************9 PP
2	HD-ZIP_I/II	131.5	3.3e-42	61	152	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k+en++L++++++L+ SMil_00018130-RA_Salv 61 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRQFEAVKAENDALHSHNHKLH 148 69************************************************************************************** PP HD-ZIP_I/II 89 eelk 92 +++ SMil_00018130-RA_Salv 149 AQIV 152 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-19	50	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	57	117	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	60	121	IPR001356	Homeobox domain
CDD	cd00086	1.08E-14	62	118	No hit	No description
Pfam	PF00046	2.3E-15	62	115	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.7E-19	64	124	IPR009057	Homeodomain-like
PRINTS	PR00031	9.3E-6	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.3E-6	97	113	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-15	117	157	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MYKDGNCKLI INIVGVASLL AKRPQTMAFS SGIEEEMHNN NNGGGSVGDD DFSDDGSQIG 60 EKKRRLNMEQ VKTLEKNFEL GNKLEPERKM QLARALGLQP RQIAIWFQNR RARWKTKQLE 120 KDYEILKRQF EAVKAENDAL HSHNHKLHAQ IVALKNREPT ESINLNKETE GSCSNRSENS 180 SENVKLDISR TQAIDSPISG RQLFPPSLRP AAAQQLFHNS KMEHAVKEES LCNMFVGMDD 240 QTGFWPWLEQ QQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	117	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071017.1	1e-128	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-103	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G9GFL1	1e-126	A0A2G9GFL1_9LAMI; Transcription factor HEX
STRING	VIT_01s0026g01950.t01	1e-121	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	9e-86	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]