PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018052-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 734aa    MW: 81679.9 Da    PI: 6.1724
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018052-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS216.41.5e-663895851200
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfs 85 
                            lv+lLl+cAeavs++d  la+++L +l+  +s  gd+mqR+aa+fteAL+arla    + +++++++p ++ +  n  e l+++++++
  SMil_00018052-RA_Salv 389 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVSALGDSMQRVAACFTEALSARLAAtltNKPTTSNIIPFNPFP-PNNLEILKIYQILY 475
                            68***************************************************99543356677777888877.5678999******* PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                            +++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A +l+
  SMil_00018052-RA_Salv 476 QACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SLESVRETGRCLTDLALSLH 559
                            ****************************************************************....9******************* PP

                   GRAS 174 vpfefnvlvakrledleleeLrvkpgE 200
                            vpfef++ v ++ledl++++++ +pgE
  SMil_00018052-RA_Salv 560 VPFEFHP-VGEELEDLKPHMFNRRPGE 585
                            *******.7*************99998 PP
2GRAS34.72.4e-11687733328374
                   GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             ++ k   q + ll  ++ dgyr+ e++g+l+lgW+dr ++++SaWr
  SMil_00018052-RA_Salv 687 GVELKRSHQSRILLGLYSCDGYRLTEDKGCLLLGWQDRHILAASAWR 733
                            56667789**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.707363734IPR005202Transcription factor GRAS
PfamPF035145.1E-64389585IPR005202Transcription factor GRAS
PfamPF035148.2E-9687733IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MASLIKSETK SIKTEMGNLK ISEGCLKSET SCCTKQEPTT TDDRESSSSS SLKKNSDFES  60
HGLTPVGSLS SLLNPTNLKF EENGDVEIHS PDYSLWESIF SDHVVDNDFM ICSPVRNMQT  120
SSYSYSYASP PRFSSPLGPN KGKGLSPLHR VFSSPNNQFM QVESLSSLPA LETLLDDNYD  180
TKEDDFVVFS PMKIAGADCY AAVPELLECL NMADSAPAIQ VPLSQQLQQE RQQEEQQQQQ  240
RHFERCIQHQ QPPNAPPHRL QRQHPPPQQL HHMPNMHNTL MLPIPEPEQG MEFPRLWRHT  300
DGGGGREELG KTRSYMRRKC LVLGYFGVWG DRGSEATTVT ETWRKRTVRG EIWGCSSDRE  360
VEEIEARRPR LAKLGEGERK QEQDSGLQLV HLLLACAEAV SKEDYMLARR YLHHLNRVVS  420
ALGDSMQRVA ACFTEALSAR LAATLTNKPT TSNIIPFNPF PPNNLEILKI YQILYQACPY  480
IKFAHFTANQ AIFEAFEAEE RVHVIDLDIL QGYQWPAFMQ ALAARPGGAP FLRITGVGPS  540
LESVRETGRC LTDLALSLHV PFEFHPVGEE LEDLKPHMFN RRPGEPTDDD PGPGPEHRDH  600
SGARSEPQRA LLPGEVLGGP ALLLGDIRLA GRDVPGGLGA EGEGGAAHLR PGDREHRGAR  660
GAGARDAARA AREVEEDHGR EGVSRGGVEL KRSHQSRILL GLYSCDGYRL TEDKGCLLLG  720
WQDRHILAAS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-513767326378Protein SCARECROW
5b3h_A2e-513767325377Protein SCARECROW
5b3h_D2e-513767325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099005.11e-150DELLA protein RGL2-like
SwissprotG7L1661e-112RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A4D8YHW31e-157A0A4D8YHW3_SALSN; Uncharacterized protein
STRINGLus100125541e-170(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.19e-43GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]