PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017692-RA_Salv

Common Name

MYB92

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 326aa MW: 37264.5 Da PI: 7.0238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017692-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl SMil_00017692-RA_Salv 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.8	6.7e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ SMil_00017692-RA_Salv 67 RGMFSQQEEDLILNLHQALGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-25	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.171	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	3.22E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-10	17	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.379	66	116	IPR017930	Myb domain
Pfam	PF00249	8.3E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	9.20E-10	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGRNSCCVKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLILN LHQALGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLLKQG 120 VDPNTHKPMM SIKDERESSS VDLRSSSSLQ INNHGLQTSG SETYNLSSLL CNSNAAGPKM 180 RENFSNKQVY DPLFLSEFQA NVDPDGFQSN FLSHSNHNNP ININPICGFN SMPDLTNFDI 240 HHHKESPILN FHHSIMMHTA TAEHDNNNNS NNNNNAFSWD DEGKLDSVFQ FQFSGIQIEE 300 RNHDGKLQNN PISDDDFGAY VFDHRM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	12	116	5	108	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059446	0.0	KF059446.1 Salvia miltiorrhiza MYB-related transcription factor (MYB92) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071911.1	1e-131	transcription factor MYB86
TrEMBL	A0A059PRU5	0.0	A0A059PRU5_SALMI; MYB-related transcription factor
STRING	cassava4.1_033233m	1e-109	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	5e-79	myb domain protein 86

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]