PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017613-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 905aa MW: 100200 Da PI: 7.3964

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017613-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.6	9.9e-18	330	430	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ +rlvlpk +ae++ +++ e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ SMil_00017613-RA_Salv 330 FEKVLSASDAGRISRLVLPKACAEAYfpPISQLEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 416 99************************555556777***********99899999999.*******************9 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ e++l+++++++ SMil_00017613-RA_Salv 417 ID-PEGKLLMGFRKA 430 87.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-28	322	432	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-19	327	429	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.03E-22	328	429	No hit	No description
SMART	SM01019	6.4E-21	330	431	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.124	330	431	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-15	330	430	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.876	593	643	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.6E-9	598	640	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MGFAVHPARW NGKRVGPCNP VALLLSVIIA GRGLGSTSGV YFNLQRKLVV NMTAYKDLVF 60 CETFHSEETG WRECTSCGKN LTRKLCSVFI VDALLPVRCW SYSTLVGSTV RAAARVVRVL 120 TPMQTPLEEK HKACGLSMEN GTDRNSERML PAQSGDEAKM DCQENLLPSQ NANVTSRKLE 180 DDLASPEGIG YKLFSSSNQS PVGPSKNYDM FQESKSLHKS LVETNLSISL SASSNSNTLS 240 GVMTEERQLN TAISSFQQGC RPRHLLPRVP TILASGLETN SSSISQLRVA RPPVEGRVKS 300 QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG RISRLVLPKA CAEAYFPPIS 360 QLEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE 420 GKLLMGFRKA SNSVSVQKQD SHYPMDMRAF QGDTLIGNAE SLPLISGYSG LLQSLKGNGS 480 PSMTLFPKHV YPGNISPQII ERNVCKSGGE NLLPQSLVPS ERKRRNIGAK SKRLLIDGHD 540 SLELRLSWEE VQDLLQPPPT AKPSTVSVED HEIEEFDEPP VFGKRSIFIV RHSGEQEQWT 600 QCDSCLKWRK LPIDLLLPLR WTCQDNINDQ MRCSCSAPDE MDSRELENLL RMHKDFTKRR 660 ALSIPKPVHG QESQENVEAL TNGAGNTSEP GSSSVATTTR HPRHRPGCSC IVCIQPPSGK 720 GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQFAKEEAEV DSVAPPQHVQ 780 LDNNAKRSES ENLLKCQSDG GPSQENAENF NGGLDLNCCP APSSHISMMN LLQEASLPLE 840 TYLRQNGLTS LVVSEQQESS TPVIAQASGE TTTQARDDAG CSTAAQEHEG SNDLSEKEQR 900 EDDTS

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MGFAVHPARW NGKRVGPCNP VALLLSVIIA GRGLGSTSGV YFNLQRKLVV NMTAYKDLVF  60
CETFHSEETG WRECTSCGKN LTRKLCSVFI VDALLPVRCW SYSTLVGSTV RAAARVVRVL  120
TPMQTPLEEK HKACGLSMEN GTDRNSERML PAQSGDEAKM DCQENLLPSQ NANVTSRKLE  180
DDLASPEGIG YKLFSSSNQS PVGPSKNYDM FQESKSLHKS LVETNLSISL SASSNSNTLS  240
GVMTEERQLN TAISSFQQGC RPRHLLPRVP TILASGLETN SSSISQLRVA RPPVEGRVKS  300
QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG RISRLVLPKA CAEAYFPPIS  360
QLEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE  420
GKLLMGFRKA SNSVSVQKQD SHYPMDMRAF QGDTLIGNAE SLPLISGYSG LLQSLKGNGS  480
PSMTLFPKHV YPGNISPQII ERNVCKSGGE NLLPQSLVPS ERKRRNIGAK SKRLLIDGHD  540
SLELRLSWEE VQDLLQPPPT AKPSTVSVED HEIEEFDEPP VFGKRSIFIV RHSGEQEQWT  600
QCDSCLKWRK LPIDLLLPLR WTCQDNINDQ MRCSCSAPDE MDSRELENLL RMHKDFTKRR  660
ALSIPKPVHG QESQENVEAL TNGAGNTSEP GSSSVATTTR HPRHRPGCSC IVCIQPPSGK  720
GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQFAKEEAEV DSVAPPQHVQ  780
LDNNAKRSES ENLLKCQSDG GPSQENAENF NGGLDLNCCP APSSHISMMN LLQEASLPLE  840
TYLRQNGLTS LVVSEQQESS TPVIAQASGE TTTQARDDAG CSTAAQEHEG SNDLSEKEQR  900
EDDTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-68	308	437	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	735	746	KRRFKTLMMRKK
2	735	748	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095138.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Refseq	XP_020553390.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Refseq	XP_020553391.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
TrEMBL	A0A4D8Z0Q2	0.0	A0A4D8Z0Q2_SALSN; Uncharacterized protein
STRING	Migut.J00040.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1