PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017405-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 298aa    MW: 31689.6 Da    PI: 10.4485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017405-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-1395139347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE++l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
  SMil_00017405-RA_Salv  95 PWTEEEHKLFLIGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 139
                            8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.58288144IPR017930Myb domain
SuperFamilySSF466897.4E-1790145IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-1691142IPR006447Myb domain, plants
SMARTSM007173.4E-992142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1094139IPR009057Homeodomain-like
PfamPF002496.8E-1195139IPR001005SANT/Myb domain
CDDcd001676.24E-995140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSLSRESPAT AVSSGGEIML FGVRVKVDPM RKSVSMNNLS EYEPVSDAIN PEAAKEGGGA  60
AGYASADDAA PQPSGGSGSG SGSGSGSGER KRGTPWTEEE HKLFLIGLQK VGKGDWRGIS  120
RNYVKTRTPT QVASHAQKYF LRRSNLNRRR RRSSLFDITT DSVAAMPMEE ARNRQQIPAQ  180
PASAPPPMTS NVNAFSTMAF PMINGPVLLS MQGGNPLENS APCQNFLVNN SSAMFAHHRV  240
PVLSTPPSSA MAELKLNQRA PLEPSALSLR LSLSTGQNQP STRAISSYKN GDSIVSVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7801162e-75KR780116.1 Rehmannia glutinosa MYB-related protein (MYB40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071772.11e-110transcription factor MYB1R1
SwissprotQ2V9B09e-70MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A4D8YFX11e-136A0A4D8YFX1_SALSN; Uncharacterized protein
STRINGMigut.D01891.1.p2e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.26e-45MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]