PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00017405-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 298aa MW: 31689.6 Da PI: 10.4485 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 95 | 139 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky SMil_00017405-RA_Salv 95 PWTEEEHKLFLIGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 139 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.582 | 88 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.4E-17 | 90 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-16 | 91 | 142 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.4E-9 | 92 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 94 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-11 | 95 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.24E-9 | 95 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MSLSRESPAT AVSSGGEIML FGVRVKVDPM RKSVSMNNLS EYEPVSDAIN PEAAKEGGGA 60 AGYASADDAA PQPSGGSGSG SGSGSGSGER KRGTPWTEEE HKLFLIGLQK VGKGDWRGIS 120 RNYVKTRTPT QVASHAQKYF LRRSNLNRRR RRSSLFDITT DSVAAMPMEE ARNRQQIPAQ 180 PASAPPPMTS NVNAFSTMAF PMINGPVLLS MQGGNPLENS APCQNFLVNN SSAMFAHHRV 240 PVLSTPPSSA MAELKLNQRA PLEPSALSLR LSLSTGQNQP STRAISSYKN GDSIVSVA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR780116 | 2e-75 | KR780116.1 Rehmannia glutinosa MYB-related protein (MYB40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071772.1 | 1e-110 | transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 9e-70 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A4D8YFX1 | 1e-136 | A0A4D8YFX1_SALSN; Uncharacterized protein | ||||
STRING | Migut.D01891.1.p | 2e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2574 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74840.2 | 6e-45 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|