PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017398-RA_Salv

Common Name

MYB101

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 297aa MW: 33755.1 Da PI: 5.9238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017398-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l d ++++G g+W+++++ g+ R++k+c++rw +yl SMil_00017398-RA_Salv 26 KGLWSPEEDEKLFDHITKFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 73 678*******************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	79	122	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ SMil_00017398-RA_Salv 79 RGMFSQEEEDLILNLHEALGNR-WAQIASQLP-GRTDNEIKNFWNS 122 788*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-24	18	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.42	21	77	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-30	24	120	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-12	25	75	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-14	26	73	IPR001005	SANT/Myb domain
CDD	cd00167	4.91E-11	29	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-25	77	128	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-14	78	126	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.36	78	128	IPR017930	Myb domain
Pfam	PF00249	2.2E-14	79	122	IPR001005	SANT/Myb domain
CDD	cd00167	7.51E-11	82	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
LLPLLKIIGV GTMGRQSCSV KQKLRKGLWS PEEDEKLFDH ITKFGVGCWS SVPKLAGLQR 60 CGKSCRLRWI NYLRPDLKRG MFSQEEEDLI LNLHEALGNR WAQIASQLPG RTDNEIKNFW 120 NSSLKKKLLK QGIDPNTHKP VAEIQVKMEK ECIMNSESNQ LSGSTKQAYD PIFMPEFEES 180 IDFNGYATTS SSFLSHCDAR PYDPSCGFNS MPNLTNFDHP KMVETDYSDS SATYNLIKES 240 SSNSIKTDII DEVAAFSWDA ENKLESMFEF QFDQAHAHQQ RTYALASISQ ELTQAFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-31	24	128	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059455	0.0	KF059455.1 Salvia miltiorrhiza MYB-related transcription factor (MYB101) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071911.1	1e-127	transcription factor MYB86
TrEMBL	A0A059PRL4	0.0	A0A059PRL4_SALMI; MYB-related transcription factor
STRING	cassava4.1_033233m	1e-105	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	2e-78	myb domain protein 61

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]