PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017369-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 426aa MW: 48908.3 Da PI: 5.4563

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017369-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.4	6.5e-15	108	180	2	73
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekd 73 Y+++A+evGF+vr+s+sk++ g ++++++vCs+eg r++++++ +e ++r + trt+Cka+lk+k++ d SMil_00017369-RA_Salv 108 IYCNHAHEVGFRVRRSSSKYN-VAGVMVQKWMVCSCEGIRKDRTSSskSEGKNRATCITRTNCKASLKIKLNAD 180 79************99998.8899***********99998445556667778**********9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-11	108	180	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MEIEEQSSSN PKGNFSNFAS SDVAAYEVYV KFPLLFMWEC DDFDEERDQS NTNKEQPAVV 60 VFDDFADDYD ESRAEKKQSN LRNEGDITCL SGSLVGLKRE KVEDLYDIYC NHAHEVGFRV 120 RRSSSKYNVA GVMVQKWMVC SCEGIRKDRT SSSKSEGKNR ATCITRTNCK ASLKIKLNAD 180 DGGEFEDCWS SMISIYGLQD NSWFKRLYDL RHKWSNVYNK DFFSAGILSS RRSESMNTTI 240 GFNAKDTTSL NELYIIFKKI VERWRSKEAD DELQCSRENP TSCLPLTGFL KHASEMDEIP 300 KQDLWDKSTS GRFEKGQNSA TWRRQMVKKF YDLVVKAQEN EEARAIVEDG LNGMISAVEA 360 LKTTWQTRDV TEETEVSSSS YDELDPSHSI TKGRKQRIDH LQKSKKKKTS DASNSNQSKE 420 EWLQNS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MEIEEQSSSN PKGNFSNFAS SDVAAYEVYV KFPLLFMWEC DDFDEERDQS NTNKEQPAVV  60
VFDDFADDYD ESRAEKKQSN LRNEGDITCL SGSLVGLKRE KVEDLYDIYC NHAHEVGFRV  120
RRSSSKYNVA GVMVQKWMVC SCEGIRKDRT SSSKSEGKNR ATCITRTNCK ASLKIKLNAD  180
DGGEFEDCWS SMISIYGLQD NSWFKRLYDL RHKWSNVYNK DFFSAGILSS RRSESMNTTI  240
GFNAKDTTSL NELYIIFKKI VERWRSKEAD DELQCSRENP TSCLPLTGFL KHASEMDEIP  300
KQDLWDKSTS GRFEKGQNSA TWRRQMVKKF YDLVVKAQEN EEARAIVEDG LNGMISAVEA  360
LKTTWQTRDV TEETEVSSSS YDELDPSHSI TKGRKQRIDH LQKSKKKKTS DASNSNQSKE  420
EWLQNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D9A4R5	8e-64	A0A4D9A4R5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17460	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-10	FAR1-related sequence 5