PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017329-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | CO-like | ||||||||
Protein Properties | Length: 393aa MW: 43061.3 Da PI: 8.0311 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.6 | 1.3e-08 | 74 | 119 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H H++vp+ SMil_00017329-RA_Salv 74 VWMCEVCEQAPAVVTCKADAAALCVTCDRDIHAAnplasrHERVPV 119 689*****************************66899999999986 PP | |||||||
2 | CCT | 70.6 | 3.8e-24 | 321 | 364 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ SMil_00017329-RA_Salv 321 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 364 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-15 | 72 | 119 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.708 | 72 | 119 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-6 | 74 | 119 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.32E-10 | 75 | 119 | No hit | No description |
Pfam | PF06203 | 4.1E-18 | 321 | 363 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 321 | 363 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
LFDCHTKYGD DTRRRWRPQQ AKVLSGRAEC GGEALRLLQV RGCASLLPRG IGFHVHSLRL 60 QGHNAADSHK HERVWMCEVC EQAPAVVTCK ADAAALCVTC DRDIHAANPL ASRHERVPVV 120 PFYDTAESVV IKSAAAAATL LSPAAESDAS LFAGVGHDRK FDPDGGYIPD SSWMPTSPIV 180 AAKIPGDAPD LKAMELFFQD SDQFLDFDNY QISSQPYSDS VVPVQTTVKP PFPARFTHDH 240 SPENQFEIDF TRSNFNSTTT TTTAASRHRL SATVSSSSMD VGVVPDGSSL SEISYPFGRN 300 IGGSTADPTG NQGSLAVGMD REARVLRYKE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF 360 AKRTDSESDI DRIFGVGAAN FIADARFGIV PSF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM431912 | 4e-43 | AM431912.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X066689.12, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069877.1 | 1e-168 | zinc finger protein CONSTANS-LIKE 5-like | ||||
TrEMBL | A0A2G9HFV0 | 1e-165 | A0A2G9HFV0_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | Migut.K00262.1.p | 1e-118 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 8e-62 | CONSTANS-like 4 |