PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017280-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 744aa MW: 83995.6 Da PI: 5.8164

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017280-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.4	9.8e-113	370	741	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL cA+av+++d + a+++L++++++as++gd mqRla yf+ +L+ar+a+ ++++y + ++s ++ l a++++ ++ SMil_00017280-RA_Salv 370 LRTLLSLCAQAVAADDRRTANEFLKQIRQHASQTGDGMQRLACYFADGLEARMAGYGDQTYGRALTYPAS---AADLLRAYHILIATC 454 5789999****************************************************988888887...89********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+ k+s++ N++ ++ e+ +r+Hi+Df+i +G+QWp+++q L++Rp+gpp+lRiTg++ p +g + ++eetg+rLa +Ae++gv SMil_00017280-RA_Salv 455 PFRKISNFFSNKTFMNVSEKVTRLHIVDFGILYGFQWPSFMQRLSTRPGGPPKLRITGIDLPCPGfrPAARVEETGRRLAGYAETFGV 542 **********************************************************99999***************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfefn+ +a+++e+++le+L ++++E l+V++ ++l +llde+v ++s+r+ vL+l+++++P v+v+ + ++n++ F +rf ea+ SMil_00017280-RA_Salv 543 PFEFNA-IAQKWETIRLEDLMIEKDELLVVSCLYRLRNLLDETVIVNSPRNIVLNLIRRMKPAVFVLGVVNGSYNAPFFITRFREAMF 629 **.7**************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 +ys+lfd+l++ +pre +er+ +Er ++g+ei+nv++ce aer+er et+++W+ r ++aGF ++pl+ +++k ak ++ ++ + + SMil_00017280-RA_Salv 630 HYSSLFDMLDTIIPREIRERMLLERTIFGQEIMNVISCEAAERTERPETYKQWQVRNMRAGFMQLPLDRETVKLAKNRVKSTYHKDFV 717 *******************************************************************************888 PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 ++e+ ++l++gWk+r L+++S+Wr SMil_00017280-RA_Salv 718 IDEDGHWLLQGWKGRILYALSSWR 741 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.89	344	721	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-110	370	741	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MAKNLSSISG PISRMRSNNE SLHVAPNPNL ISDLRLSDRF LNGNITDNSR HVSSQFSFDT 60 GGQSPEDDSP EDFDFSDDVL KFINHILMEE EVEDITCIFQ ESAALQAAEK SFYEVLGEQY 120 PASSDSQLVP YLDPGVESPD EKFLEESRNS VYDPSNVESF CPNWFYDPNF NGYNGHHITV 180 NVSNTTCQSS YSSSSSNGTL TDGPVDSPVS TLKIADVFGD QESAMQFMKG AEEASKFLPS 240 GSNLITGMNI DESREKAMKV GSANVAVKLE KRSDEEPLDI PRGKKNPHHE TLGSQEERSS 300 KQSAVYSDTT VSDDMFDLVL LCSGGKNESA LRKELREVTK STQQEDHLDG VHDRKSRGKK 360 KGGRRSVVDL RTLLSLCAQA VAADDRRTAN EFLKQIRQHA SQTGDGMQRL ACYFADGLEA 420 RMAGYGDQTY GRALTYPASA ADLLRAYHIL IATCPFRKIS NFFSNKTFMN VSEKVTRLHI 480 VDFGILYGFQ WPSFMQRLST RPGGPPKLRI TGIDLPCPGF RPAARVEETG RRLAGYAETF 540 GVPFEFNAIA QKWETIRLED LMIEKDELLV VSCLYRLRNL LDETVIVNSP RNIVLNLIRR 600 MKPAVFVLGV VNGSYNAPFF ITRFREAMFH YSSLFDMLDT IIPREIRERM LLERTIFGQE 660 IMNVISCEAA ERTERPETYK QWQVRNMRAG FMQLPLDRET VKLAKNRVKS TYHKDFVIDE 720 DGHWLLQGWK GRILYALSSW RTAY

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MAKNLSSISG PISRMRSNNE SLHVAPNPNL ISDLRLSDRF LNGNITDNSR HVSSQFSFDT  60
GGQSPEDDSP EDFDFSDDVL KFINHILMEE EVEDITCIFQ ESAALQAAEK SFYEVLGEQY  120
PASSDSQLVP YLDPGVESPD EKFLEESRNS VYDPSNVESF CPNWFYDPNF NGYNGHHITV  180
NVSNTTCQSS YSSSSSNGTL TDGPVDSPVS TLKIADVFGD QESAMQFMKG AEEASKFLPS  240
GSNLITGMNI DESREKAMKV GSANVAVKLE KRSDEEPLDI PRGKKNPHHE TLGSQEERSS  300
KQSAVYSDTT VSDDMFDLVL LCSGGKNESA LRKELREVTK STQQEDHLDG VHDRKSRGKK  360
KGGRRSVVDL RTLLSLCAQA VAADDRRTAN EFLKQIRQHA SQTGDGMQRL ACYFADGLEA  420
RMAGYGDQTY GRALTYPASA ADLLRAYHIL IATCPFRKIS NFFSNKTFMN VSEKVTRLHI  480
VDFGILYGFQ WPSFMQRLST RPGGPPKLRI TGIDLPCPGF RPAARVEETG RRLAGYAETF  540
GVPFEFNAIA QKWETIRLED LMIEKDELLV VSCLYRLRNL LDETVIVNSP RNIVLNLIRR  600
MKPAVFVLGV VNGSYNAPFF ITRFREAMFH YSSLFDMLDT IIPREIRERM LLERTIFGQE  660
IMNVISCEAA ERTERPETYK QWQVRNMRAG FMQLPLDRET VKLAKNRVKS TYHKDFVIDE  720
DGHWLLQGWK GRILYALSSW RTAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-55	370	741	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077208.1	0.0	scarecrow-like protein 14
Refseq	XP_020549007.1	0.0	scarecrow-like protein 14
Refseq	XP_020549008.1	0.0	scarecrow-like protein 14
TrEMBL	A0A4D8ZQA9	0.0	A0A4D8ZQA9_SALSN; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14