PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017098-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 570aa MW: 66051 Da PI: 8.5389

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017098-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1e-14	37	128	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 kfY++YAk +GF+vr+ ++ + ++g++ ++ C+++g + ++ + + + +t++ t+Cka+ + + +g +++ ++++ H SMil_00017098-RA_Salv 37 KFYKKYAKACGFQVRMGTKDRA-KDGTVRMQYALCNRQGVWAYTDAS-RINPHTKKRRTTSCKANCMARAIFqvtTGGYYIRTFNEGH 122 6***************9998.77779999999**9999998.44444444455555555444444333499******* PP FAR1 86 nHelap 91 +H+++p SMil_00017098-RA_Salv 123 SHSMVP 128 9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-12	37	128	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-28	249	340	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.138	413	449	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.2E-4	420	441	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0036	424	451	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MADDSSSSIA KLCFPKVEDS RRPHTGQMFA NLHDGVKFYK KYAKACGFQV RMGTKDRAKD 60 GTVRMQYALC NRQGVWAYTD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE 120 GHSHSMVPGP SQHFMPANRN VGEIQQMLIM SGIKANIGPM RTFRMVREMV GSYKGVGCTS 180 TDFKNYVRDL KVYNKGSDAH MLVEALSNKQ GLGRGFKFFY DEDEDQKLRR LIWADEISIK 240 NFKMFGEAIS FDATYNTNRY KLIFTPFTGR DNHGKCISFG AALISKEDTE SYSWVLDKFV 300 QIMGRAPRLI ITDQDPGLKR AVSSSWKDTR HRYCMWHISM KVAEKVPIRL RDDQDYKSKF 360 EDIIWSDHED PDAFEENWNN MIDEYELSDN RWFSDMFEDR MFWVPAYFRN GEFIVRQTQS 420 EDDLTCTCNL FNRKGYLCRH VFLVIINSQC DKIPQKYISL RWCKFSLLCP GEAQSELHNE 480 YSQDSSNEEF RYFKIVGEII PHIRLNEDLK NQFFADLMEL KNKFSNTDCM EQTSVAKKKR 540 FEEFYGAAST DSPSVTPLDI SRTKSSSVGG

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MADDSSSSIA KLCFPKVEDS RRPHTGQMFA NLHDGVKFYK KYAKACGFQV RMGTKDRAKD  60
GTVRMQYALC NRQGVWAYTD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE  120
GHSHSMVPGP SQHFMPANRN VGEIQQMLIM SGIKANIGPM RTFRMVREMV GSYKGVGCTS  180
TDFKNYVRDL KVYNKGSDAH MLVEALSNKQ GLGRGFKFFY DEDEDQKLRR LIWADEISIK  240
NFKMFGEAIS FDATYNTNRY KLIFTPFTGR DNHGKCISFG AALISKEDTE SYSWVLDKFV  300
QIMGRAPRLI ITDQDPGLKR AVSSSWKDTR HRYCMWHISM KVAEKVPIRL RDDQDYKSKF  360
EDIIWSDHED PDAFEENWNN MIDEYELSDN RWFSDMFEDR MFWVPAYFRN GEFIVRQTQS  420
EDDLTCTCNL FNRKGYLCRH VFLVIINSQC DKIPQKYISL RWCKFSLLCP GEAQSELHNE  480
YSQDSSNEEF RYFKIVGEII PHIRLNEDLK NQFFADLMEL KNKFSNTDCM EQTSVAKKKR  540
FEEFYGAAST DSPSVTPLDI SRTKSSSVGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-55	FAR1-related sequence 5