PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017089-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 266aa    MW: 29395.9 Da    PI: 4.5675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017089-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-1970117253
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                            +y+GVr++k +g+W+AeIrd +     + kr++lg+f++aeeA +a++  r+++
  SMil_00017089-RA_Salv  70 KYRGVRQRK-WGKWAAEIRDpF-----QhKRVWLGTFDSAEEASRAYEIKRLEF 117
                            8*******9.**********55.....45*********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-2270117IPR001471AP2/ERF domain
CDDcd000182.90E-2470124No hitNo description
PROSITE profilePS5103220.66670127IPR001471AP2/ERF domain
SMARTSM003801.5E-1870133IPR001471AP2/ERF domain
PfamPF008472.8E-1270117IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1770120IPR016177DNA-binding domain
PRINTSPR003677.2E-117182IPR001471AP2/ERF domain
PRINTSPR003677.2E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIAEPRKPVL FNREACLNRK GKVRPEPPAA AAAASKVLES ESSDNSEGSS KKKRAFSATE  60
SSRQNPVNGK YRGVRQRKWG KWAAEIRDPF QHKRVWLGTF DSAEEASRAY EIKRLEFKAL  120
TTVLTCRRRG ARAVRMARLG SSNTSAVELD STTSWVLDCK CEDAVVEERQ DKCGLMGLDQ  180
IDLDMELQSL VAGDGFVPSF DDLIDEDLDE FPIFGFDVGD EGTALPDFDF DFDFEEACGG  240
ALTWMDEPSP MNGINGGSAS FNIACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15681251270Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070810.12e-58ethylene-responsive transcription factor ERF118-like
TrEMBLA0A4D9AVL82e-84A0A4D9AVL8_SALSN; EREBP-like factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-21ERF family protein