PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016935-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 196aa    MW: 21051.7 Da    PI: 7.5747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016935-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-194897255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  SMil_00016935-RA_Salv 48 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 97
                           69****888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-134897IPR001471AP2/ERF domain
SMARTSM003801.3E-3748111IPR001471AP2/ERF domain
PROSITE profilePS5103224.06548105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3248106IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2248106IPR016177DNA-binding domain
PRINTSPR003678.3E-114960IPR001471AP2/ERF domain
CDDcd000181.90E-3249105No hitNo description
PRINTSPR003678.3E-117187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAQIIILETP PFSAAAAAAD EAKSSTLAQG EESSGGKRRR TSDEKHPTYR GVRKRSWGKW  60
VSEIREPRKK SRIWLGTYPT AEMAARAHDV AALAIKGQSA VLNFPGSAHE LPRPASAVPK  120
DIQAAAAKAA ALSSLPEPSC QSSDAVKPAS TAHDDDTFFG LPDLSLASYN LASSWQLAGA  180
DIGIFRLEEP FLWECY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19451051172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093328.11e-71ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ78e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A4D8ZFI92e-79A0A4D8ZFI9_SALSN; EREBP-like factor
STRINGXP_009771308.11e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]