PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016861-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 697aa MW: 80654.9 Da PI: 8.7419

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016861-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.4e-16	34	132	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevt 79 kfY++YA+ GF +rks+ +++ +g+i +r + C++eg +++ ++ +k++r++++ r+gC+ak+ + g +++ SMil_00016861-RA_Salv 34 KFYKKYARASGFATRKSTINRH-PDGSIRERYMLCNREGVWQKKADEnlkspmsskPKKRKRKTTSCRVGCHAKVIFECAGGGCFRIR 120 6***************9998.8999********999988888998777778888999***************** PP FAR1 80 kleleHnHelap 91 +++ H+H+++p SMil_00016861-RA_Salv 121 LFNEGHTHKMVP 132 *******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-14	34	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-27	252	344	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MDVLDNEELI SPHCDESLRP YVGQIFCTLS QGEKFYKKYA RASGFATRKS TINRHPDGSI 60 RERYMLCNRE GVWQKKADEN LKSPMSSKPK KRKRKTTSCR VGCHAKVIFE CAGGGCFRIR 120 LFNEGHTHKM VPPHSQHLMP SNREVGDLQQ MLIVSGLKAN IGPMRTFRLF REIAGSYEDV 180 GCTSNDFKNF VRDFKLYGAD SNAKMLLEAF TNKQELGDGF KFCYELDEDN KLRRLIWSDK 240 TSIQNFKMFG ECVSFDATYN TNRFKMIFTP FTGRDNHGKC ISFGAAIISG EDMESYSWVL 300 DKFAEIMGQT PRLLITDQDP ALKKAVAASW KETRHRFCMW HITMKVAEKL PKRLGEDPDF 360 KTNFDSIVWS NHDEPEVFEE KWNNMIKDYD LASNKWFSDM FDDRTFWIPA YFRDVPMSSL 420 FRTTSLSESE NSYFKRFISK NSDLVLLYTN YCSAIDSQRH THQKLTLADE TRAPMLIYNL 480 AIEEHASKIY THSVFKKVQD EIRDSLEGCT IRKLFSENED NVYVVRTTLM ASSPNMRIDR 540 IPERYVLKRW CKYNIINPDG ANGLQREERD IFKSPVEFRF LKLVCETVGY VKGDDELTEQ 600 LYSMLVEVKD KFANIRGSET QSKSKERFFS EFYGSTPSES PSILPPDVVK TKGSGPGGRR 660 KSHQEKAMLL AQKPLRLCRR CNTKGHHDSR NCPTKEA

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MDVLDNEELI SPHCDESLRP YVGQIFCTLS QGEKFYKKYA RASGFATRKS TINRHPDGSI  60
RERYMLCNRE GVWQKKADEN LKSPMSSKPK KRKRKTTSCR VGCHAKVIFE CAGGGCFRIR  120
LFNEGHTHKM VPPHSQHLMP SNREVGDLQQ MLIVSGLKAN IGPMRTFRLF REIAGSYEDV  180
GCTSNDFKNF VRDFKLYGAD SNAKMLLEAF TNKQELGDGF KFCYELDEDN KLRRLIWSDK  240
TSIQNFKMFG ECVSFDATYN TNRFKMIFTP FTGRDNHGKC ISFGAAIISG EDMESYSWVL  300
DKFAEIMGQT PRLLITDQDP ALKKAVAASW KETRHRFCMW HITMKVAEKL PKRLGEDPDF  360
KTNFDSIVWS NHDEPEVFEE KWNNMIKDYD LASNKWFSDM FDDRTFWIPA YFRDVPMSSL  420
FRTTSLSESE NSYFKRFISK NSDLVLLYTN YCSAIDSQRH THQKLTLADE TRAPMLIYNL  480
AIEEHASKIY THSVFKKVQD EIRDSLEGCT IRKLFSENED NVYVVRTTLM ASSPNMRIDR  540
IPERYVLKRW CKYNIINPDG ANGLQREERD IFKSPVEFRF LKLVCETVGY VKGDDELTEQ  600
LYSMLVEVKD KFANIRGSET QSKSKERFFS EFYGSTPSES PSILPPDVVK TKGSGPGGRR  660
KSHQEKAMLL AQKPLRLCRR CNTKGHHDSR NCPTKEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	KKRKRK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-68	FAR1-related sequence 5