PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016837-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 203aa MW: 23285.4 Da PI: 5.1937 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 8e-20 | 15 | 69 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R +f+++q++ Le++Fe + p + +++LA+klgL+ rq+ +WFqN+Ra+ k SMil_00016837-RA_Salv 15 SRRKRFSDDQIKSLETMFETEARPELHLKQHLANKLGLQPRQIAIWFQNKRARSK 69 57999************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 106.3 | 2.3e-34 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +++r+s++q+k+LE++Fe+e + e + K++la++Lglqprq+a+WFqn+RAR k+kq+E++y++Lk++yd+l+ + e+L+ke+++L SMil_00016837-RA_Salv 16 RRKRFSDDQIKSLETMFETEARPELHLKQHLANKLGLQPRQIAIWFQNKRARSKSKQIEQEYSVLKSNYDNLALQFEALRKENQTLLV 103 799***********************************************************************************99 PP HD-ZIP_I/II 90 elke 93 ++++ SMil_00016837-RA_Salv 104 QVQK 107 9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.475 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-17 | 13 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.46E-17 | 13 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.4E-17 | 16 | 69 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-18 | 16 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.82E-14 | 16 | 72 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 8.5E-15 | 71 | 111 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
LLLMSTSIKK GTKNSRRKRF SDDQIKSLET MFETEARPEL HLKQHLANKL GLQPRQIAIW 60 FQNKRARSKS KQIEQEYSVL KSNYDNLALQ FEALRKENQT LLVQVQKLRK MADNKDCEEN 120 DKNQIKLAAS EIPRLLLDIS GDELCMPLCS ELNGREDYLE EEADVLNMAQ IAESSLASPE 180 NGCSLESCTF LDNTGGTAQW WDF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070385.1 | 1e-103 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A4D8YB51 | 1e-126 | A0A4D8YB51_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.E00626.1.p | 3e-91 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-40 | homeobox 7 |