PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016782-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YA
Protein Properties Length: 383aa    MW: 42287.1 Da    PI: 9.91
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016782-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32225281158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq Rak+e ekkl  k+rkpylheSRhkhA++R RgsgGrF
  SMil_00016782-RA_Salv 225 EEPVYVNAKQYHGILRRRQIRAKAELEKKL-VKNRKPYLHESRHKHAMKRLRGSGGRF 281
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-37223284IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.902224284IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-28226281IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.2E-24227249IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860229249IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.2E-24258281IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
LGESQQKMPT LTKSNNRQVE KGLRSIQTST PYGQPWWQGL GSNDMPSSGQ QEDSSINPAA  60
VQPQGSVEGI PRDTETTALH SGVLNVTVGG YYVHIVLSVT DTRSMKLGLN RNNGEQEQQH  120
LDANGQMELV GHSIVSTPFL STAYMKDMDM AQLFNAAQQF PMLTSYPYAD PQYGGILTYG  180
APVKTNLTLT LFSAWNTKTK PGTAVHPHLL GYHPGRMPLP LEMEEEPVYV NAKQYHGILR  240
RRQIRAKAEL EKKLVKNRKP YLHESRHKHA MKRLRGSGGR FLNTKKLDGK ENSASAEQSK  300
SGETTSSQSR SPASAHLSTN SNGASHQNNE RASMVQEMHK EHILSNGFNN SHGLGSYYES  360
GHFSENNWNS LVSRGPRGSS SSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21225288265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265274RHKHAMKRLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093323.11e-122nuclear transcription factor Y subunit A-1-like
RefseqXP_011093324.11e-122nuclear transcription factor Y subunit A-1-like
TrEMBLA0A4D9BN210.0A0A4D9BN21_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-33nuclear factor Y, subunit A1