PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016717-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 308aa    MW: 34455.5 Da    PI: 9.0752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016717-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-082772346
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                           +WT eE +++ +a +++ ++   +W+ +a++++ g++  +++  ++ 
  SMil_00016717-RA_Salv 27 KWTVEENKRFENALALFDKDtpdRWHNVASMIP-GKSVTDVIKQYRE 72
                           7********************************.*******999986 PP
2Myb_DNA-binding24.18.5e-081391741247
                            HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
  SMil_00016717-RA_Salv 139 FLLGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 174
                            67789******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.9E-92476IPR001005SANT/Myb domain
PROSITE profilePS500906.0862774IPR017877Myb-like domain
PfamPF002494.9E-72773IPR001005SANT/Myb domain
CDDcd001679.10E-82774No hitNo description
SuperFamilySSF466891.5E-112781IPR009057Homeodomain-like
SMARTSM007170.023123177IPR001005SANT/Myb domain
PROSITE profilePS512949.756130179IPR017930Myb domain
TIGRFAMsTIGR015571.3E-10138178IPR006447Myb domain, plants
SuperFamilySSF466892.17E-9138178IPR009057Homeodomain-like
CDDcd001671.36E-5138175No hitNo description
Gene3DG3DSA:1.10.10.604.4E-6139174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNREIASYLS STTSSNWLFE DGSAVAKWTV EENKRFENAL ALFDKDTPDR WHNVASMIPG  60
KSVTDVIKQY RELVDDVSDI EAGLIPVPGY SANSFTLEWM AADRTFHGFN HLYSPAAAKR  120
NPSSARCNDH ERKKGVPQFL LGLKKYGKGD WRNISRNFVT SRTPTQVASH AQKYFIRQLS  180
GGKDKRRSSI HDITTVNLEE AKSPSPEKEG PDSPQKSSLI LQQQRCVDGE VVVRGRYDSE  240
LSNEGCVMGF GPSNAALISH LQGTSSSPSI GLNLHHHFHQ LQSIDHHGLR LGHHHGTVFQ  300
MNPTSRHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1628901173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094978.11e-147transcription factor DIVARICATA-like
SwissprotQ8S9H71e-86DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G9I5K71e-141A0A2G9I5K7_9LAMI; Zuotin
STRINGXP_002534707.11e-106(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-95MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]