PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016638-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 139aa    MW: 15526.1 Da    PI: 6.117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016638-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-201263256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f tae+Aa+a+++a+ +l+g+
  SMil_00016638-RA_Salv 12 KYRGIRRRP-WGKFAAEIRDPNRNG--ARLWLGTFETAEDAARAYDRAAYALRGH 63
                           8********.**********96665..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-321271IPR001471AP2/ERF domain
PfamPF008478.5E-141263IPR001471AP2/ERF domain
CDDcd000185.79E-171272No hitNo description
SuperFamilySSF541711.7E-231271IPR016177DNA-binding domain
PROSITE profilePS5103224.8561270IPR001471AP2/ERF domain
SMARTSM003801.7E-331276IPR001471AP2/ERF domain
PRINTSPR003672.8E-111324IPR001471AP2/ERF domain
PRINTSPR003672.8E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEAGREEQKA VKYRGIRRRP WGKFAAEIRD PNRNGARLWL GTFETAEDAA RAYDRAAYAL  60
RGHQAILNFP NDGHYRNPVP TPTSTVSQER AAAAAASSEA PAEVDGSMNE GVIELEYLDN  120
NLLEDLLATH HDSRRSGFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-29970263ATERF1
3gcc_A5e-29970263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872990.14e-47ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC59e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5X7W94e-43A0A2P5X7W9_GOSBA; Uncharacterized protein
STRINGXP_008235691.16e-43(Prunus mume)
STRINGGorai.001G252900.12e-43(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]