PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016503-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 402aa MW: 44638.3 Da PI: 8.4804

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016503-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+e++++a k++G W++I +++g ++t+ q++s+ qk+ SMil_00016503-RA_Salv 50 RERWTEEEHERFLEALKLHGRA-WRKIEEHVG-TKTAVQIRSHAQKF 94 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.04E-17	44	99	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.77	45	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	47	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-16	48	97	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-13	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	2.29E-10	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MASAAMAVQG KHASAAMSAT EVLLQSKEQF SSADEYALKV RKPYTITKQR ERWTEEEHER 60 FLEALKLHGR AWRKIEEHVG TKTAVQIRSH AQKFFSKVAR ESSNGDGSNA KLIEIPPPRP 120 KRKPVHPYPR KPGSVVKTRA SISEKLTSQD VSEQETQSPT SVLSENHSDT SARADSCTPE 180 GISSPVPSAL PLDAVLLVVL KNLQDPNQCM KTENVVPMKK FLRIWSLSQD DDLAEEDESA 240 VHRLKLFGKT LLVKGSFGTS FSMCKAESVD KSEGDASFPL KVIPLKVTVE HVSHVDASST 300 VCFPWLMLSS SSTQQMLNKK NNVDNNEEKE VSSSGSSTDS DREKSSDTDS RPPLLEMRGT 360 ANEFASRLSK RASADFEDCR KGFVPYKRHS REAEKQRSCI CL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MASAAMAVQG KHASAAMSAT EVLLQSKEQF SSADEYALKV RKPYTITKQR ERWTEEEHER  60
FLEALKLHGR AWRKIEEHVG TKTAVQIRSH AQKFFSKVAR ESSNGDGSNA KLIEIPPPRP  120
KRKPVHPYPR KPGSVVKTRA SISEKLTSQD VSEQETQSPT SVLSENHSDT SARADSCTPE  180
GISSPVPSAL PLDAVLLVVL KNLQDPNQCM KTENVVPMKK FLRIWSLSQD DDLAEEDESA  240
VHRLKLFGKT LLVKGSFGTS FSMCKAESVD KSEGDASFPL KVIPLKVTVE HVSHVDASST  300
VCFPWLMLSS SSTQQMLNKK NNVDNNEEKE VSSSGSSTDS DREKSSDTDS RPPLLEMRGT  360
ANEFASRLSK RASADFEDCR KGFVPYKRHS REAEKQRSCI CL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085926.1	6e-97	protein REVEILLE 1
TrEMBL	A0A4D8YHR5	0.0	A0A4D8YHR5_SALSN; Circadian clock associated 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-46	MYB_related family protein