PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016353-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 297aa    MW: 32746.7 Da    PI: 7.4554
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016353-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-071856439
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
                           r+C+ + +     +C+ ++ +lC+ C   +H+    H++
  SMil_00016353-RA_Salv 18 RTCDACRSAASAVYCRADEAYLCAACDARIHHAaslHER 56
                           68******99********************866688876 PP
2zf-B_box284.6e-0957101341
               zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                             ++C+ +e+ ++ l C+ ++  lC+ C   +H+       H +vp
  SMil_00016353-RA_Salv  57 VWVCESCERAPAALLCKADSASLCAACDADIHSAnplsrrHHRVP 101
                            689*****************************6688989977776 PP
3CCT69.86.9e-24232275144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  SMil_00016353-RA_Salv 232 REARVMRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRK 275
                            9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0911554IPR000315B-box-type zinc finger
CDDcd000213.35E-71859No hitNo description
PROSITE profilePS501199.9832059IPR000315B-box-type zinc finger
SMARTSM003362.8E-1455102IPR000315B-box-type zinc finger
PROSITE profilePS5011911.16355102IPR000315B-box-type zinc finger
PfamPF006435.2E-756101IPR000315B-box-type zinc finger
CDDcd000212.72E-958102No hitNo description
PfamPF062035.5E-18232274IPR010402CCT domain
PROSITE profilePS5101716.757232274IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLKFETEAGG DATNTWGRTC DACRSAASAV YCRADEAYLC AACDARIHHA ASLHERVWVC  60
ESCERAPAAL LCKADSASLC AACDADIHSA NPLSRRHHRV PVQPIPYGPE GDDDEDEAAS  120
WLLLNPIKNG EEARPPPEQQ DVYGVSQSSY GGGDSIVPVD YQKGKNHHCF PLGLEAGYTY  180
PASMSHSVSI SSTDMGIVPE SRNEASVSHT QTRPPKGSID LFSATQLSQM EREARVMRYR  240
EKKKTRKFEK TIRYASRKAY AETRPRIKGR FAKRKLDPIF SSQPLMADNS YGVVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021143.11e-112PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
RefseqXP_011039781.11e-112PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965024e-94COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A068LCU91e-129A0A068LCU9_9MYRT; Zinc finger protein CONSTANS-LIKE 2
STRINGevm.model.supercontig_70.61e-108(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-61CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]