PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016301-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 228aa MW: 26071.8 Da PI: 7.0591

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016301-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.9	4.6e-56	62	157	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 +eqdrflPianv+rimk+v+Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa++tlGfe+yv+plk+yl+k SMil_00016301-RA_Salv 62 KEQDRFLPIANVGRIMKRVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFEEYVHPLKKYLAK 149 89************************************************************************************ PP NF-YB 90 yrelegek 97 yre+egek SMil_00016301-RA_Salv 150 YREIEGEK 157 ***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.7E-53	55	174	IPR009072	Histone-fold
SuperFamily	SSF47113	1.18E-39	64	164	IPR009072	Histone-fold
Pfam	PF00808	1.8E-27	67	131	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.9E-20	95	113	No hit	No description
PROSITE pattern	PS00685	0	98	114	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.9E-20	114	132	No hit	No description
PRINTS	PR00615	5.9E-20	133	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKRDRDDFED DEKPQIGPSR TPYRISPDTT TSSYPNTTTN QNPYASKNTT NNNNNNNNSN 60 NKEQDRFLPI ANVGRIMKRV MPANGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK 120 TINGDDILWA ITTLGFEEYV HPLKKYLAKY REIEGEKLNV PKQQRVEQRM QHDQNSSNHL 180 PYNSVYSAAN LISPPPFVSA DPPFPLPFSQ NSIQTAALPQ HDRVDDHW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-44	62	152	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	62	152	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099714.1	1e-104	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	9e-65	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A4D8ZYE9	1e-113	A0A4D8ZYE9_SALSN; Uncharacterized protein
STRING	AET04767	6e-84	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	3e-62	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]