PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016222-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27146.4 Da PI: 9.9843 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.2 | 9.9e-16 | 17 | 95 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 r+ +p ++e+ +++ +s++ +l++++g sWe+k+ r+ +++ +v+++GW +F++++ L+++Df+ F+++g+ f v v++ SMil_00016222-RA_Salv 17 ERMKVPSAYCEKLKQE--KSRKAVLKTPKG-SWEMKV--RRDDDGdIVFEDGWPRFARDHALNDRDFLAFEHTGNLHF--DVVVCD 95 4689******998755..7789*****998.8*****..6666656*************************8886666..676666 PP | |||||||
2 | B3 | 41.3 | 2.7e-13 | 149 | 227 | 12 | 89 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHH..HHHHT--TT-EEEEEE-SSSE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeF..vkangLkegDfvvFkldgrse 89 ks + +p +fa++ +++++ k ++l+d+++r+W ++li+++ + + + +GW++F ++a++Lk gD ++F+l+++s+ SMil_00016222-RA_Salv 149 KSPVVGIPAQFARRSNLDSK--KSISLRDPKNRKWPINLIVKREPYFrVSMCGGWRDFyaANAKHLKIGDKCIFHLNSTSS 227 555678*********99954..56***************99877766688889*****4446789**********987644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.983 | 4 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-16 | 6 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 7 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.26E-15 | 7 | 95 | No hit | No description |
SMART | SM01019 | 1.1E-9 | 7 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-13 | 17 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-14 | 133 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-14 | 133 | 228 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-13 | 133 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.374 | 138 | 238 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0012 | 148 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-11 | 151 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAVGTKFVNI MMPDLMERMK VPSAYCEKLK QEKSRKAVLK TPKGSWEMKV RRDDDGDIVF 60 EDGWPRFARD HALNDRDFLA FEHTGNLHFD VVVCDARTAC EKKPIADCRN AMPQNQDKGK 120 AEKKGVIESQ IMPSFTIDIT PYIVPTKFKS PVVGIPAQFA RRSNLDSKKS ISLRDPKNRK 180 WPINLIVKRE PYFRVSMCGG WRDFYAANAK HLKIGDKCIF HLNSTSSTSK TAALDVEF |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-16 | B3 family protein |