PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016221-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 237aa    MW: 27743.6 Da    PI: 5.6966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016221-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-171492201787
                            E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                             +p +f++++  g   +++  ++l+d++grsW v l+ ++++ +  + +++GW  F  an+Lk+gD +vF+l++r
  SMil_00016221-RA_Salv 149 NIPVPFLRANnlG--GPQQWRVILNDPKGRSWVVSLSNENSG-GirFRMKAGWPAFYAANRLKDGDYCVFHLNRR 220
                            69********554..558889***************764444.347*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.4461104IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-1310110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1311104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.42E-912101No hitNo description
PfamPF023626.9E-813101IPR003340B3 DNA binding domain
SMARTSM010198.9E-613104IPR003340B3 DNA binding domain
SMARTSM010190.0012138232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-15148221IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-14149220IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-13149222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-11150220No hitNo description
PROSITE profilePS5086311.223150232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEGRHELSIT THFVKVMMPG FHEKMNLPPI VSKQVEARKW RRVILESRIG KFSVSLCKNH  60
ENGLICMKRG WPEFVERHAL TIGEFVFFKP TDDLRFNVSV FGTNMTEKEF HNEKKEEEEE  120
EEEEEEEEED EEETLNPMEK QEERGLERNI PVPFLRANNL GGPQQWRVIL NDPKGRSWVV  180
SLSNENSGGI RFRMKAGWPA FYAANRLKDG DYCVFHLNRR LLTPTTIVLD VQIIIRG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.18e-15B3 family protein