PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016132-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 564aa    MW: 61825.4 Da    PI: 5.7378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016132-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3321.1e-1011975646374
                   GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                            +++A a+s+g+ e a ++L+rl++ a+ +g++ qR+aa++  AL++r++      ++  p+se      ++++a++kl++e s ++k+
  SMil_00016132-RA_Salv 197 IDAAAAISEGKPEVAAEILTRLQQVANASGTSEQRVAAHMFTALKSRVNP-----SENPPVSELF---GVKHAASTKLLYEFSLCFKL 276
                            679**********************************************9.....4445555554...99999*************** PP

                   GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                            s ++aN aIlea+e++  +++H++Dfd++qG+Q+  Ll+aLa+++     +++  l+iT++ + + ++ eel+++g++L+ +A+++gv
  SMil_00016132-RA_Salv 277 SIMAANLAILEAAEEDgySTIHVLDFDVGQGGQYGHLLHALAAKRqldtnKSSVALKITALTDFSGFEDEELKAVGDNLQAMATKIGV 364
                            **************99889***********************555598866677*********9989********************* PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            +f+f+v    +++dl+ e+L+++++E+laVn++++l+rl+desv++e+ rde+L+ vk+lsPkv++vveqe+++n++++ +r+ ++ e
  SMil_00016132-RA_Salv 365 SFNFRV-QNLNIADLNREKLEIQSDETLAVNFAFKLYRLPDESVTTENLRDELLRRVKRLSPKVMTVVEQELNTNTAPLTARVRDTYE 451
                            *****9.888****************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg 348
                            +y+al+dsle++++re++ r+ +E+  lgr+i n vaceg++r+er+e ++kWr+r+++aGF++ p+s+ + +  ++ l+     s g
  SMil_00016132-RA_Salv 452 FYAALLDSLESTVARENSVRVGIEEG-LGRKIGNSVACEGRDRVERCEVFGKWRARVSMAGFQSRPMSQLTLEALRSKLNSGTrgSAG 538
                            **************************.**********************************************999999875547999 PP

                   GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                            + v+eesg +++gW++r+L+ +SaWr
  SMil_00016132-RA_Salv 539 FIVNEESGGICFGWMGRKLTIASAWR 564
                            *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.092166542IPR005202Transcription factor GRAS
PfamPF035143.9E-99197564IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MSSGFFGGVP DFFTAGRRPN YNSNLVGQQQ FPVRGAVPDA PVQIRRPEMI GKRSLEEFHQ  60
QQSFLQQQQL GLYLRNVRSR PSYQHASPVE FSPVSSISAE VSSTSSLSAS LDSRFGGFQF  120
GEAYDEHRLQ ELEKQLLDDE DDGHTVSAIT DSEWSETIQN LIGTSQKPIS PSPTSSSSSC  180
CSTSASPPLP CPKQASIDAA AAISEGKPEV AAEILTRLQQ VANASGTSEQ RVAAHMFTAL  240
KSRVNPSENP PVSELFGVKH AASTKLLYEF SLCFKLSIMA ANLAILEAAE EDGYSTIHVL  300
DFDVGQGGQY GHLLHALAAK RQLDTNKSSV ALKITALTDF SGFEDEELKA VGDNLQAMAT  360
KIGVSFNFRV QNLNIADLNR EKLEIQSDET LAVNFAFKLY RLPDESVTTE NLRDELLRRV  420
KRLSPKVMTV VEQELNTNTA PLTARVRDTY EFYAALLDSL ESTVARENSV RVGIEEGLGR  480
KIGNSVACEG RDRVERCEVF GKWRARVSMA GFQSRPMSQL TLEALRSKLN SGTRGSAGFI  540
VNEESGGICF GWMGRKLTIA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3120056327378Protein SCARECROW
5b3h_A1e-3120056326377Protein SCARECROW
5b3h_D1e-3120056326377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076123.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-131SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A4D8YIL60.0A0A4D8YIL6_SALSN; Uncharacterized protein
STRINGMigut.F01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-121SCARECROW-like 8