PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016107-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 26283 Da PI: 5.7364 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.1e-08 | 80 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a+ rEr RR ++N++f eL +l + K +K ++L A++ +++L SMil_00016107-RA_Salv 80 AKACRERERRGKLNERFLELSAILGRE---RPFKTEKLAMLSDAIRLLNQL 127 5678**********************9...99***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.372 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.57E-5 | 80 | 130 | No hit | No description |
Pfam | PF00010 | 1.5E-5 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 82 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-5 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-9 | 83 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQNQHVHSFT ENCWCDVIDY SSLLDDDGAP PPAVVSESPP LPSEIVCMSI DATHSEVTTL 60 EERGSSRKRG RSDQNGGIGA KACRERERRG KLNERFLELS AILGRERPFK TEKLAMLSDA 120 IRLLNQLKTE SMDYMEMNTR LLEEIKILKA EKNELREEKA KLKADKERIQ QQLETMNIPS 180 IGFTASHPPM YEAEVKKVPM LPSYGFVPMW QYLPPSVRDT TIDHELRPPA A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257507 | 0.0 | KP257507.1 Salvia miltiorrhiza clone 74 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091209.1 | 8e-99 | transcription factor bHLH104 | ||||
Refseq | XP_011091210.1 | 8e-99 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 8e-56 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A0H3YB45 | 1e-171 | A0A0H3YB45_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.G00474.1.p | 2e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4762 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-57 | bHLH family protein |